RNA id: AMCG00004506


Basic Information

Item Value
RNA id AMCG00004506
length 2610
RNA type mRNA
GC content 0.56
exon number 9
gene id AMCG00004506
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 52049032 ~ 52057186 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCAGCCAATAGGATTCTGGGAGGCGGGACCACGCTGGTAGCGAAGGCAGTGGCGTCCTGGGCAGCGGAAGTTTGAAGTGGCAGTTTGGACGTTTGAACAGCCGGGTCTGAGGAGGTCTGGCACACATTTCATCCTGCAATATATACACATCGACGTGACGGTGCGGTAAAAGTCGTTAACCAACTTCATCACAGAAAGGGATGAAAACATGAGTCCTGTGAAGAGCAAGAAGAGGCCGGGGGCGGGGGGCTGCACACGGGAGAACCGGGCCACTGCCGCCGGCACAGAGAGGCAGCCTCGGCCCCGCAGCCTGGTGGTGAACCAGAAGGTGCTCGCCGAGAGGAACCAGGCGGTAGTGCCCGTGGGGGCCTGGGTGGAGAGCGGGCAGGACTGCCAGGAGCACCCGGCCATCCTGGCCCTGCTGACGGAGGAGCAGCAGTCGGAGGCGTggcaggagaaggaggagagtcTGCGGCGCTTCCAGGAAGACGTGCGGCAGCGCGTGGCTCAGCAGGCCAGGGCCAGGAAGAGACGGCAAATGCAGACCTGTTACGAGACGGCGCAGCACGAGGGCAGGGTGGTGCAGCAGTCCTGCGATGCCGCCCGGCGCCTGACTCCCAGGAAGAACGCGTTTTCCTCCGAGCCCCAGGGGGAGCTGGCCATCTGCAGCCCGGGCTCGCGCTGGGTGAGCGCCCAGGGTCTGGGGGCCGAGAATGGGGGGACCGGGGTGACTGCCAGGGCCTTCCAGCAACAGAAACATCagctgaGCAAAGTGAGGCAGCAGGTCCGACGCCGACTGGCTTCCTGTCAGACTGTGCCCACGGGGGAAGTGACATCAGAGCTCCCAGGGGGCATCTGGAGAACCTCGCCAACTCGTGATGTGTGCGAGAGGCTGACGAGGGAGCCCTACCCCACGGGTCCCATCCCTGGCTTCAGCACGGACTTCAGGGCCACTCGGGTCCTCTGGCCCGGGGAGGATCAAGAGGAGCTGAAGAGACAGCGCCAGTCGCAGTTCCTGATGTACCGCCGCCTCTTCATGGACATCGAGAGAGAGCAGGTGAAGGAGCAGCGTCGCCACCGGCAGCACCTCCGCAGGATCACCAGGATTAAGGCCGACAAAGAGCGACAGAGGCGAgctgaggagaggaggatggagcgGCCAGTGGAAGGTGCGGACGAGAGGGAGGACACGtccgagagagggagggagatccTGGAGAGACTGCGGCTGGAGGAGGACGAGGGGgcgcaggagagggagaggaaggcaCGGGCGCAGAAAGACAAGGAGGCCACGAGGTACGTGGAGGCTCTCCGGGCGCGGATGAGTGAGAGACTGCAGCAGGAGAAGGCGGAGCTGCCCCCTCTGTGTTGCTGTGGCGAGGGCTTCTGGGACTCCCATCCCGACACCTGCGCCAACAACTGCGTCTTCTACAAGAACCCCAGAGGCTACGCCCGGGCGCTGCAGTCGGTGCTGTCCTGCTGCGACCTGCGGGACGGGAGCCTCGGTCACCGGGCGTCCGCCAGGAGGATAGCCTCGGCCCACGCCCTGTCCCCCAGGAAGTAGAGCGGGCCGAGGACCGGCGCTTCTCAGCGACTCTTCTTCTGGAAACGGACTCGAAGGACAGCGGCCACCAGAACACGATCAGTTTCCACCCGCTTGTTTTTTTGATGCAATCTTATTTATGAGaacttaaaaataagtattcacccccctcaTCTGCAAGAATATTAAAGACTGATCAGTGAAGAAGAAAGATTCCGACTGAATGCAGGTGTAAACGGATCGTTCTTCGAGTCCAAGTTTGTAATTGTATCCCCCCATGACTTGTGTTGtttggtgtgtttttcttctgctttctgGAGCTCCAAAGGAACGCTTCAGTGGTTCCAGAATGTATGGTGTCTGTTTTAAGAGGGACTTTTCTCAGTGGCGGCAGGGGGCTTATGAAACTGTTCATTGCGCAGGAGCCACTTCCACTCTGACACCGAGTGTCTCGTGTCTGCATGAATAGTAGGACTCTGCTTTGCCTGTTCGTAAGACCGTGAAGAAGCAGAACTGGCCTGAGAATATGTGAACAGAGTGAGGTACAGCGCCAATGAAACTGCTTTCGGACTATGTGTACTCCGAGTAATGACCAAAGCCTACCACCCAAACCCCAGGCCTCAGACCAAAGACCTTTGACCACTCGAGGACCTCTTTGAATGTGCTGATTGCTGTGGATAATTACTAGGAGTCTTAACATGGTTGGCTAACACCCATTACCAGTGTGTTTTATACTTTGATAGCTTTATAATCTATTTAAGAATGAATGAAATACTGAAAAGGTTGTGAAATTGTCCAGCTGTTGTGTGGAAGTCTTTTTAAATCCTTAGGcttgtgttattaatgatgAATGTGTGAGAAACAGATTGggtgccttttttatttgttattataacgagtggtttgtttttgtagctTGTCTTCCATAAAATATACATCGAATCAATGATATCTGGGACGTGATCTTATTCGTTATTCTTCGACAAAGCTTGCGCTTGCATGGTCAGATCCTTGAGAACAATCCAAGATATTTGTTCACAgcccttttatttttgtctggtG

Function

GO: NA

KEGG:

id description
K16752 CCDC15; coiled-coil domain-containing protein 15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10683 lncRNA upstream 385608 51645849 ~ 51663424 (+) True G8658
TU10625 lncRNA upstream 934180 51114580 ~ 51114852 (+) True G8605
TU10616 lncRNA upstream 1077730 50970956 ~ 50971302 (+) True G8596
TU10533 lncRNA upstream 1289672 50759075 ~ 50759360 (+) True G8538
TU10499 lncRNA upstream 1353465 50695224 ~ 50695567 (+) True G8509
TU10839 lncRNA downstream 33699 52090885 ~ 52091291 (+) True G8764
TU10851 lncRNA downstream 111130 52168316 ~ 52168540 (+) True G8775
TU10891 lncRNA downstream 211414 52268600 ~ 52268807 (+) True G8808
TU10894 lncRNA downstream 311907 52369093 ~ 52369476 (+) True G8811
TU10899 lncRNA downstream 475543 52532729 ~ 52533018 (+) True G8816
AMCG00004507 mRNA upstream 5577 52028739 ~ 52043455 (+) True AMCG00004507
AMCG00004509 mRNA upstream 47043 51989499 ~ 52001989 (+) False AMCG00004509
AMCG00004499 mRNA upstream 76827 51963369 ~ 51972205 (+) True AMCG00004499
AMCG00004504 mRNA upstream 98783 51948473 ~ 51950249 (+) True AMCG00004504
AMCG00004501 mRNA upstream 102436 51939549 ~ 51946596 (+) False AMCG00004501
AMCG00004508 mRNA downstream 1523 52058709 ~ 52072945 (+) True AMCG00004508
AMCG00004510 mRNA downstream 22484 52079670 ~ 52092210 (+) True AMCG00004510
AMCG00004511 mRNA downstream 100642 52157828 ~ 52158748 (+) True AMCG00004511
AMCG00004514 mRNA downstream 114100 52171286 ~ 52191311 (+) True AMCG00004514
AMCG00004513 mRNA downstream 140142 52197328 ~ 52212412 (+) True AMCG00004513
TU10796 other upstream 35402 51989353 ~ 52013630 (+) True AMCG00004509
TU10780 other upstream 102214 51939561 ~ 51946818 (+) True AMCG00004501
TU10626 other upstream 933770 51114941 ~ 51115262 (+) True G8606
TU10527 other upstream 1295683 50743791 ~ 50753349 (+) False AMCG00004477
TU10340 other upstream 1891313 50151264 ~ 50157719 (+) True G8377
TU11143 other downstream 1126208 53183394 ~ 53183983 (+) True G9012
TU11164 other downstream 1207121 53264307 ~ 53270070 (+) False AMCG00004546
TU11263 other downstream 1546575 53603761 ~ 53607898 (+) True G9118
TU11273 other downstream 1578853 53636039 ~ 53643598 (+) False AMCG00004563
TU11276 other downstream 1590825 53648011 ~ 53843859 (+) True G9128

Expression Profile