RNA id: AMCG00004564


Basic Information

Item Value
RNA id AMCG00004564
length 2105
RNA type mRNA
GC content 0.42
exon number 2
gene id AMCG00004564
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53717067 ~ 53719775 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTGGTCAAGGTCTATGACTACTACCAGACCAGTAagactttttaattaataagtgGCCTAGTAAAATGATGACATTGTGCATTACAAAGTGGTAGTGGGCAGGTATGCCATAGCAGAAGAATTGGCAGGACTGCTCTCTGGTTATGAAATGTCCAGTCCCTGGGCCTCCTTAGATGACCACTTCAAAACTGTGCAAAACACAGATGAGAGCAGAATACATAGAATGGGGTCAAAGACACAACCAGAACAGTATGGTACGAGACTGGCTCCCCTTCCTCTGTTGTCCACAGCTGTAAATGGTTCATCGGATATCTTCATCATACTTCATACATTGCACAGCTCTGGGGTACTGGGTTCGAGTCTTGGGTCAGGGGCCtctctgtgtggagtttgcatgttctccctgtgtccgtgtgggttttctctgggcactctggtttctgtccaaagacatgcgaGTTAGGTTAAATGGCTtcgctaaattgccctgtaggtatgcgtgtgtgtgtgctgccctgcgatggactggcatcccatcctgggtgtattcctgctttGCGcactatgcctgccaggatcagcTCCGGATTCCCAGCGActctcaccaggataagcggtttcgaaaatggatggatggacttCAGTTCATACTTCCACATCATGGAGGACCTGGTTGATTACTCTACACTTGGATAACTGCAAACAGCTATTCCCTGTATATTGACATACTGCTAAGAGTCACTACACCATAAAGAACATGCACCTGGCTTCTGTCTTTGTATCAGAAAGTGTATGGCATTCAGTTCTGGTGGCATCTGAGGCTGATAAGGTAGGGATCATTGAAAAACTAGGTGAATGCCCTCTACCGTGCCAGGCTCTGGTGGGCTGAGTGGCCATAAAAGCCTTCCTTTGTTGGTATAAAAACATGTGAAAGCCCCTATCCACAGTGATGAACAATACAGTGCTGCTTGACCCTGACTGCCACAGAACACAAACACCTTGAGATTCTCAGcgagaaaaggaaattaattaatatagttttaaaatacatacattcaataGTTTGTATTCAAGCTGTGATAATGGCAGAGGCCTGTACAGTAGAAAACGTGTGGCATTAGCCAATGAACAAACTGGATACATTGCAATAACTGGTACTGAAAAACACTATGataccatatttaaaaataaaaacccaagtTTTCAATGTGTTGAACAGGATCTCTATATAGCAGGTTCCAGTACTGGAGGCTGTGTACATTTCAGCTTATGGGTACCTGTCTGTCCCTCAATATGTGGTCCTTATGTCTTGTAGGTGAGCAGGCCGTGTCTGAATACACCTCTCCATGTCCTGACGATCGTGGAGAAGACATCAATGAAGTGTAAAAGCAAAGCGTGGACTGCGGAAATCATTCAATAACATACGCAGGGTCTTCAACCAAAGGTGTGGAGCTGAGGACTGACAGTCTACCAATTACTGATGTATTTAGCTGTCAAATACCCACGTTGCACCACAAAGCACAAGCCCAGTTCTTCTATTCTTATCATTTATCAGATGGAAGATTCAGTGGTTActtcttaaataataaaatcaatttaaaaactataaaagtATAATGGTCTCATTAAAGGTAATCACCTGATCCCTATGAATGTAagacatcatatatatatataatttaggtAATTTAGATTGAGTTTAGGGTGGCTATATACTGGGACAGACCTTTTGCCTCTAGAATTCCTAAAAATAATTGTGGTTCTTTGTTTGATTGACTAACTCTCCTGGACTATTCATACTACATTGTtgtcatgtgtgtttttgttttataacacaATCAAAAAAGGAAGGAGGAACCTGCCTCATTCACTGGAGCAAATCAGCAAAGTTCTACTTCCTCAATAAAATCACTTCCATTCCCATCTACAGAGCTGCCAGTATAAGTAAATTCAATATGGGCATGATTATAAAAATATCTACTTGCTACCCCCCTCAACTGTAACACTACAGAGTTAAACTAtttaacacacatatatatttatgccttgtacttaactatatttttgcacttatgttgtaagtcgccctggttaagggcgtctg

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11185 lncRNA upstream 417195 53299663 ~ 53299872 (+) True G9043
TU11127 lncRNA upstream 571273 53145595 ~ 53145794 (+) True G9000
TU11113 lncRNA upstream 597371 53117197 ~ 53119696 (+) True G8987
TU11108 lncRNA upstream 610070 53106744 ~ 53106997 (+) True G8982
TU11001 lncRNA upstream 814285 52839448 ~ 52902782 (+) True G8900
TU11285 lncRNA downstream 39475 53759250 ~ 53761273 (+) False G9129
TU11292 lncRNA downstream 140552 53860327 ~ 53861528 (+) False G9129
TU11346 lncRNA downstream 145165 53864940 ~ 53866447 (+) True G9160
TU11367 lncRNA downstream 213394 53933169 ~ 53981983 (+) True G9170
TU11389 lncRNA downstream 293051 54012826 ~ 54013029 (+) True G9191
AMCG00004565 mRNA upstream 9100 53707094 ~ 53707967 (+) True AMCG00004565
AMCG00004563 mRNA upstream 46545 53638328 ~ 53670522 (+) True AMCG00004563
AMCG00004555 mRNA upstream 421856 53293103 ~ 53295211 (+) True AMCG00004555
AMCG00004554 mRNA upstream 433078 53273700 ~ 53283989 (+) True AMCG00004554
AMCG00004546 mRNA upstream 446813 53259179 ~ 53270254 (+) True AMCG00004546
AMCG00004566 mRNA downstream 107172 53826947 ~ 53848054 (+) True AMCG00004566
AMCG00004568 mRNA downstream 129853 53849628 ~ 53863217 (+) True AMCG00004568
AMCG00004576 mRNA downstream 292074 54011849 ~ 54012342 (+) True AMCG00004576
AMCG00004577 mRNA downstream 296586 54016361 ~ 54024156 (+) True AMCG00004577
AMCG00004578 mRNA downstream 357389 54077164 ~ 54100748 (+) True AMCG00004578
TU11273 other upstream 73469 53636039 ~ 53643598 (+) False AMCG00004563
TU11263 other upstream 109169 53603761 ~ 53607898 (+) True G9118
TU11164 other upstream 446997 53264307 ~ 53270070 (+) False AMCG00004546
TU11143 other upstream 533084 53183394 ~ 53183983 (+) True G9012
TU10796 other upstream 1703437 51989353 ~ 52013630 (+) True AMCG00004509
TU11303 other downstream 46768 53766543 ~ 53767110 (+) True G9132
TU11293 other downstream 128147 53847922 ~ 53849754 (+) False G9129
TU11395 other downstream 312256 54032031 ~ 54033307 (+) True G9197
TU11486 other downstream 599319 54319094 ~ 54322914 (+) False AMCG00004585
TU11499 other downstream 631182 54350957 ~ 54352720 (+) False AMCG00004588

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00041382 False 2834 mRNA 0.41 6 NC_007133.7 17475034 ~ 17482810 (-)
eurasian perch (Perca fluviatilis) TU40944 False 474 lncRNA 0.43 2 NC_053114.1 29318055 ~ 29319508 (+)
striped catfish (Pangasianodon hypophthalmus) TU40944 True 9908 lncRNA 0.46 3 NC_047596.1 28325376 ~ 28366271 (-)
tiger barb (Puntius tetrazona) TU40944 False 1650 lncRNA 0.37 3 NC_056702.1 10158159 ~ 10257553 (+)