RNA id: TU11367


Basic Information

Item Value
RNA id TU11367
length 2516
lncRNA type inter_gene
GC content 0.61
exon number 2
gene id G9170
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53933169 ~ 53981983 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcaAATGTAGGACAGTCCAGCCAGTGCAGGACAAACACTTTGGTTCACCCaaaataaagagagacagatggTCGTTTGTgcttctgcatttttatttacattgtacaataaATTATAGATATATTCACTTTCCGAGCTGCGATACTCGTTCTATCAAACCACACACTCAAGGTAACGCAGGCGGCATCGCCCTCCACAGGGACCAACCTCAGCCGGCTGCGTCTCCGTGGCcatggggggcgggggggcagccCGCAGCTACCGCAAACGCTCCGGTTGGAGAAAGCTtcaaaaaacttaaaaaaaaaaaaaaaaaatgaaataaataaaaaataaaaccaaacaataataataaaaaaaaaactaagtgaTTATTTTGCCAGTCTTAGAGAAAGTACAGACCGAGGCAATACAGGCTGCTCCCTCGAAGAAAACTTGCATTACGAAAAACTgcaccacccccctcccctcaacTCCCACCCAGAGATAAAAGCCCATCGATGGCGTCTCAGTGCTGGGCAAGAGCTGTGAATGAAAGGTCCCCTTCAGCGTCGTCTGCATTCGACCATCTGCGCCGCGCAAGAGCCGCAGAATAAACATCTGAGAGAAAGGAAAGGTACAGCACCATGGAACTGATATGACACGAGACTCCCCAATAAAAACAGCCATCTTGAGAATAAGTCACTGTGTGAGGGAACGTGGTAACACAAGACTGAgagatgaaatacaaaataaaaaatatgttcccGAGATATAAACAGTGCGGTGTCTGAGGCTAGGTCTGCAGTCCATCGCGAGGCTCTCTCGTGTGTGTTCTGGTACGCCTCCCTGGACAAACTAGGAATTCAGTTTGGTTACAATCATTTTGTAAAGGCAGGTCTTCCCCAGGCCATTTAAGCCCCTCGCTACAATTGCAAGATTGCCAAGGCGCTATAATTTTCAATTGCGCTTTCAATTTTGTACCGATGCTCTTGCATTCAAGACTTTGAAGAAATATCAAAATTTTCAGCGTTTACATCAAGATTTCGAGACCTGGGCCACCATTTTGCTATGTGCAAAGGCCGATGTCTAACTAACGCTTCCGATTGGCTGACGAGCAAATCTCAATCGCAGATTCACTGTCTGTCAGCGCACACTGCCGCAGGCCTACTGCTCCACGGACTCTCCACTGACCTTTAACCCCAACCACTACCCAACAAGGCCATCAGAAAGGACTGTTGCCcctgattgtatttatttctgttctcAAGTGATAAaaatggtgtttgtgtgtgtatacatctTCAACCTTTAACGACCCAATGCTGGCCTCCCCAAGACGTTTCCACATTTCTTTATacacacagatgtatttaaCTAAAGAAATACTGAAATTCATCTCACACTCTGAGTGTCACACTGCACACATCTTGAGGTGGGGTATTTATAGAGCTCCTTCAGACAGAACTCGGCTCGGCCGTGAAAGTCGAGTGCGAATCTCGCCACGTCGACTCCGATGCTAAAGTCTCCCCAATGGGCTTCTCGAGGAAGTAGACAGACAACAAGGGGTTCAACTCAATTCCAGACAGAGCGCATCGATATGTAGCAAAATGCACTCAAGGTTTATAGCCTTCGGAGACTGTTCTTTTCATATGAAAGCAAGAGAACGGGggttaaaaagaacaaaactcaAAACCAAAAACGCTCCCACTCTTTAGCACGCCAGGTTCTTTCATTCACAGCCCTTGAAACGTCAGTAGCAGCCACACTGAGAGGAGGCGAGACAGGGCGTCACCTGAGCAAAAACAGCAGGTATGCCTGCAGTACAGCCTGGCCCCCTTCCCATCAACCCTTTTGAACAGTCAGAGaaggagagatagagagaggaaggaagagaaggagagacaggTGGATTGGTAAGAGACAGCGTTGGAAGGAAGAGATTGAAATGgagtgagagtgagacagagagatgggatgggggagggagagagaggagtccAGGGGTTGTGTCCAATACAGTGTCCCCACTGCTCCCCCGTCCCCCGCTCAGCACCGTCAAAACCGCCAACATTGCCAGCTGAGGGGTAGACAATTCAGTAGAAACACAGAACCCACCAAGAGAACAAAACGCTTGTCCTTTATGTTGTGGCGACGtggatgaaaaaaaattaaaacaaacaaaaaacaaaaggcgCAGTTGGGACGAGACTTGGAGAGCTGCAGTGCATAGTGGGAGTTCTGAGCCGGGTGGGGTTTTTTTTATTGCCTGGGGAGACCCCTCCCtgcttcacacacaaacacacacgcgcCCTTTCCTCCCTGTCCTGAGCAGAGACGAGGTTCGAGGGACAGGTGGGAgcaggcgggggggggggcggtgccGCCGTCTCGCTCCTGGTTCTTGCAGCTCTGTCAGATGTCCGGGGACGGATCAGAGTCGGCACCTCCCCGCCACCTCCCTCTGCTGGAAGTGGTGACTGCGGCCGATGTGAGGAGGGGAGAGCGCCCTTGTCTGTATTGACAggagagggagg

Function

GO:

id name namespace
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11346 lncRNA upstream 66722 53864940 ~ 53866447 (+) True G9160
TU11292 lncRNA upstream 71641 53860327 ~ 53861528 (+) False G9129
TU11299 lncRNA upstream 101248 53677564 ~ 53831921 (+) True G9129
TU11296 lncRNA upstream 170603 53677564 ~ 53762566 (+) False G9129
TU11389 lncRNA downstream 30843 54012826 ~ 54013029 (+) True G9191
TU11444 lncRNA downstream 222238 54204221 ~ 54204990 (+) True G9243
TU11445 lncRNA downstream 224035 54206018 ~ 54206971 (+) True G9244
TU11446 lncRNA downstream 225168 54207151 ~ 54207360 (+) True G9245
TU11447 lncRNA downstream 225638 54207621 ~ 54207935 (+) True G9246
AMCG00004568 mRNA upstream 69952 53849628 ~ 53863217 (+) True AMCG00004568
AMCG00004566 mRNA upstream 85115 53826947 ~ 53848054 (+) True AMCG00004566
AMCG00004564 mRNA upstream 213394 53717067 ~ 53719775 (+) True AMCG00004564
AMCG00004565 mRNA upstream 225202 53707094 ~ 53707967 (+) True AMCG00004565
AMCG00004563 mRNA upstream 262647 53638328 ~ 53670522 (+) True AMCG00004563
AMCG00004576 mRNA downstream 29866 54011849 ~ 54012342 (+) True AMCG00004576
AMCG00004577 mRNA downstream 34378 54016361 ~ 54024156 (+) True AMCG00004577
AMCG00004578 mRNA downstream 95181 54077164 ~ 54100748 (+) True AMCG00004578
AMCG00004580 mRNA downstream 275585 54257568 ~ 54281403 (+) True AMCG00004580
AMCG00004586 mRNA downstream 312951 54294934 ~ 54302577 (+) True AMCG00004586
TU11293 other upstream 83415 53847922 ~ 53849754 (+) False G9129
TU11276 other upstream 89310 53648011 ~ 53843859 (+) True G9128
TU11303 other upstream 166059 53766543 ~ 53767110 (+) True G9132
TU11273 other upstream 289571 53636039 ~ 53643598 (+) False AMCG00004563
TU11263 other upstream 325271 53603761 ~ 53607898 (+) True G9118
TU11395 other downstream 50048 54032031 ~ 54033307 (+) True G9197
TU11486 other downstream 337111 54319094 ~ 54322914 (+) False AMCG00004585
TU11499 other downstream 368974 54350957 ~ 54352720 (+) False AMCG00004588
TU11498 other downstream 371199 54353182 ~ 54353945 (+) False AMCG00004588
TU11514 other downstream 412808 54394791 ~ 54395300 (+) True G9300

Expression Profile