RNA id: TU10096


Basic Information

Item Value
RNA id TU10096
length 3918
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G8188
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 49582118 ~ 49586095 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCAGTAGTGCAGACAGAAGTCACTTTATTTAGATAACAGAAAGGACACAGCTTACACAAAGCAGAGATACGACGCAGAAAAGTTTAATCAGCTCCAGCACAAAAGTGGACTGATGGCGCCTCTCTTACCCTGTTGTAAAAAACTAACACGTGTGAAGCTGGACTATTTGTGAGAATTAGAAACCTCTTGCCACAAGCGCAGAGCAATGTGACGGGAACAAAACAGGATACATCAATGTAGAACTAGCTGATTGTACATCGCAGAGATGTTTCAAAGCAGAAGTTGAAAAGATGCAGCGTCCCTCTTTCTGCGCGAACGTCACATGAAGATAAAAGTTCTCGAAACCACATCACGACAAATCGAGCACCAGGTAAATTACAATTCTGCATGAGGATGTTTTAAATGGCTTCTATAGCATTCGTAAGaataacagggaaaaaaaaaagccatagGTTACGCAGCAGATGAAACAAAAGGGAAGGTGAGGCTAATCATTATTTGGGCTGCAATTTATCATAATATAGATGTTTCCAAAGCCAAATGTTCTGTAAACTGCTTTGGTTTGTACTCTGTTGCTGTAATGGAATCTTACTTCCTGCAGTATTTGTCACAACTAAACAGGACCTTTAATAGTCTCTTCAATTTcccaggaaaaaaatattatttgcatAGCACCAAACTAGCAGTCTACCATTCAAGCTCCATCCCAACATTAAAAGTGTCACTACAAAATGTCTAAATCAGCTGATAGCCATGCTGCATagatcaataaattaaaataaaaatcaattttcaataaACCACTGGACGCTGCATCTTCAGAAGCAAAGCTACACTTCAGCACTTCACAAGCTAccacacagaaatataaaaacattacctgaaaaagacctagaaatgttttgttcatatattttttcctgaccatagttcttaaaaaaaaacagaagtgtattCAAACACAGTTGTGAAAATTATGAAGGAGTGATTGTTTTTCGCAGGTACAGCAGGTGGTAAAGCAGAGATTAAAAAcgagagataaaaaaaaagaggcaTCAAATGGATGGGAGCTTTTTCCCCCCAGTAACAAACTGTcactgtaaaaaagaaaagaaaaaagccccccttaaaatgaaatgcatcaagAAACATGGAACAGTCTTAAAGCTGGCCATAACGAAAGCTGCTGTGTAACAGTAGCTCAAGTTgcattattcagaaaatgtgttgcTATGGGCGGGAGTCATTTGTACCATGCAGAAAACAGTTGTGAACACTTTCCTCATTTTCCACATTCATCTTTGCATTACTGACATGCTCTCTAAATTTAACATGCATTGTCTACTTAAGCAGTAAAGTGTGTTTGAATAACAGTGAATAACTTTAAATgctatttttactttttgagAGATTATACAAAGTATACagtgcacatacatacacataaacacacacacatatatatatatatatatatatatatataaatgttaacgTTTTTGTTAAGTTGCTGCCCAATGACTCAACAgaatgttttgtgtatttttgtacttgcgtaaattgtatgttttttttttcctgtagtcCATAAATGGAGGAATAAGAAATGACCAATCATAAAGCAGTCAGCCAATCATGAAAATGAGtaatttcaagttatttcacCTGTAGGATTATGAGCTTCATAACTGCAACCCATTGGACAGAGAGCAGCCAATCAGCGGCACCCTGCTGAGAACATTAGTCATAGaacaacaagacaaacaaaaacatttactcCTCTGGCAGAGTGAAGGATTCGAGGACCGtgtcacacacatttcagaatgACAAAGGTGACAAATATCACAGTGCTTGTGGACATGATCAGCTGGtcttttattatgtatatagaAGTAGATATTAGTGGATGACATCAACTGAAACGCTGCTAGATTTTCTTTGCAAtgacaaagagaaaataatcatCTAGTACTAcaaagaaagaggaagagaccTGTCAATGctaataagatatatatatatatatatatatatatatatacacacacacacacacacacacttaattgTTTCTTTGATAGCTGGTTTTAAAAGAGGATAAAGAGTGGGACGTTGTTTGATGGACATCAGGCGCTGGGTTCATGCTTGAGGCGCTGGCTGCGGGCCTTGTAGACCTCGATGAGCAGGTCTTTGACATACTggatctctctctccacagactCGGCCTTGTCTCGCAGTTCTCGGTTCTTCCCCTCCAGCCCCCGGAGCTCCTCCTCCAGGCAGTCCAGCTCGGCTCTCTTGCGCTGGCGATATCTGCACAGGAAAGACCAAGGCCGGTGATGCAGCTCTGACACGCAAGCACTCAAGACAAATGCATGGCAGGTAACAGAAAGGAGTCAAAGAAGACCGCTGACCGGTCACGAAGAGGTAAGCATAGACGCACAAGGTGATGGTCTTAGTGCTGTGATGTCACTGAATGGTCAATGTGAAAAAAAGGCTTCGAAAGTTTAGGTCCGGTCAGTTATGGGGTGTTACAAATAAGTCCACCTCAGAGCCCAAGTATTTAATGGtcagtaaatacaattttccaAGTTCCTTCTTGTAAGTGCAGAGTTTTGGCACTGCCTGTCATTACTGGTTTGTGATTTTCAACATGACTTCCATTCATGCTCTAATTTGGACATGGATGTCACAAACTACACACAACGGACACATGCAAGACCCTCTTGTTGTCCCTTACCTGTGAGCTGCAGTCTTGTTCTGGTCTCTCTTCTTCTGCTTGCGTTCTCCGGTTGGGGCTTCAGGGGCAGTGTCTGGCTCTGGCTTAATGTGACAGGGCTCCTCTTGCTCCTCTCTGTCTGCTCTGTGGCTGGGAGATCCCCCCTCCACTCCATCCCCGTCTCCCCCCGGCACACACTCCCGGGACTCCTCTCCCAGGAAGCCGGGGAAGCAGAACCCATGGTGCTGCTCTCCTGCCTCTAAACCCCCTGCCCTCAAAGACTCGTCTGGCCTCTCCAGAAAGCTGCTATAGGCCTCCGCTGTGGCTGTGACCTCGAGAAAACATGGCTTGTCTTCCACCTCTACCAGCTCGCCGGCTCTACCGCGGTGCTGCACCTCCACCTCCATTCCATCTTCGCTGCCACTGACCTCCTTCAAACCATACAACAACTGGCCCTCTTTCTTGTGGGTCGCCTCCAGTGAACCACCAAGGCAAAACCCACCCACCACCTTATCTCCATCGGTAACATCTTCTGTGAAACAGTAATTCTCCTCCTCTTTCAGCAAGATGGTGCTTTCCCTAACTTCTACTGCACTACCCAGGCAATATTCCTCCCCACCCACCTTGTTGTCCCCTATAAAGCAGTAGCTGACTGCCACTTCTGGACTACCTGAGAGATTTCTTTTGCAACTCCAGATGCTATTCTCCAGTCCCTCGTCTACCCTTCCACTATCAGAAGATCTCTTTCGACTACTATGGCTGCCTGGACGACTGCAATTATATGGGACTGGTCTAGGCGTTTTGGGACGGCCAACTGGACCGCCGCAGAAGCTCAGCAGATCAAGCTCCCCAGTTGCCAATGTAACGAGCAGTGGGCTGGATTCTGACTGGCCCGAGTTGTAAGGGGTATAAGGCAAATGATAGTAAGACTGGGGGCTTGCTAGGAGAGATGCTTTGTCAGATTTTTCCAATTTCTCTGCTTTCTCCGATTCCGATTCAGACAGGAAGTAATCCTCCAGTTGTGCCAGCTCTTCCTGCAGCAGAGAGGTCATGACCTCCAGGTCAGAGGGTACCTGGACATCATGCTGGgggggtgagggagggagggaggggttgggtgagggagaggagtgagagggagggaggtaaGAGGAGAAATCCACTTTTTCAGTCATCCAGTCGGTGAGACCATCGC

Function

GO:

id name namespace
GO:1901607 alpha-amino acid biosynthetic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10055 lncRNA upstream 146367 49434043 ~ 49435751 (+) True G8167
TU10030 lncRNA upstream 263302 49307845 ~ 49318816 (+) False AMCG00004425
TU10023 lncRNA upstream 334084 49246488 ~ 49248034 (+) True G8140
TU9977 lncRNA upstream 522063 49055360 ~ 49060055 (+) True AMCG00004424
TU9980 lncRNA upstream 552935 49024156 ~ 49029183 (+) True G8111
TU10214 lncRNA downstream 225240 49811335 ~ 49814024 (+) False AMCG00004442
TU10255 lncRNA downstream 364524 49950619 ~ 49951516 (+) False AMCG00004449
TU10311 lncRNA downstream 480340 50066435 ~ 50068081 (+) True G8356
TU10334 lncRNA downstream 551534 50137629 ~ 50139705 (+) True G8371
TU10335 lncRNA downstream 557210 50143305 ~ 50144990 (+) True G8372
AMCG00004430 mRNA upstream 10818 49547269 ~ 49571300 (+) True AMCG00004430
AMCG00004431 mRNA upstream 59205 49519124 ~ 49522913 (+) True AMCG00004431
AMCG00004427 mRNA upstream 152310 49425765 ~ 49429808 (+) True AMCG00004427
AMCG00004428 mRNA upstream 170551 49403208 ~ 49411567 (+) True AMCG00004428
AMCG00004425 mRNA upstream 263283 49298736 ~ 49318835 (+) True AMCG00004425
AMCG00004434 mRNA downstream 22784 49608879 ~ 49631014 (+) True AMCG00004434
AMCG00004437 mRNA downstream 171026 49757121 ~ 49772253 (+) True AMCG00004437
AMCG00004441 mRNA downstream 211448 49797543 ~ 49804404 (+) True AMCG00004441
AMCG00004442 mRNA downstream 220266 49806361 ~ 49814024 (+) True AMCG00004442
AMCG00004443 mRNA downstream 229178 49815273 ~ 49817818 (+) True AMCG00004443
TU9962 other upstream 648023 48932450 ~ 48934095 (+) True G8099
TU9841 other upstream 1434962 48146888 ~ 48147156 (+) True G7999
TU9559 other upstream 3613812 45962010 ~ 45968306 (+) True AMCG00004380
TU9000 other upstream 6891009 42688779 ~ 42691109 (+) True G7329
TU8899 other upstream 7365756 42212510 ~ 42216362 (+) False AMCG00004304
TU10340 other downstream 565169 50151264 ~ 50157719 (+) True G8377
TU10527 other downstream 1157696 50743791 ~ 50753349 (+) False AMCG00004477
TU10626 other downstream 1528846 51114941 ~ 51115262 (+) True G8606
TU10780 other downstream 2353466 51939561 ~ 51946818 (+) True AMCG00004501
TU10796 other downstream 2403258 51989353 ~ 52013630 (+) True AMCG00004509

Expression Profile