RNA id: TU10339


Basic Information

Item Value
RNA id TU10339
length 218
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G8376
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 50149325 ~ 50149542 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCTGCTTCTGACCACGCCGAATCTGAAATGTGATACACTGCGCCCCGTGTGCGCTCAAGGCAGAGACCACGTTTGGTGAAGCTATACTGACCTGCCAGGAAGTGAGGCACGATGTACACATGAGGTGACCGCAGGGCTCGATCTTCACGTCTTTGTCGTTCTCAGCACAGATCTTGCACAACTGGAACGTGGAGCCCATCTCGCAGTACAGCTCGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10338 lncRNA upstream 204 50148884 ~ 50149121 (+) True G8375
TU10337 lncRNA upstream 1130 50147876 ~ 50148195 (+) True G8374
TU10336 lncRNA upstream 3502 50145371 ~ 50145823 (+) True G8373
TU10335 lncRNA upstream 4335 50143305 ~ 50144990 (+) True G8372
TU10334 lncRNA upstream 9620 50137629 ~ 50139705 (+) True G8371
TU10343 lncRNA downstream 21978 50171520 ~ 50171951 (+) True G8380
TU10383 lncRNA downstream 87135 50236677 ~ 50237721 (+) False AMCG00004463
TU10416 lncRNA downstream 134883 50284425 ~ 50288071 (+) True G8443
TU10499 lncRNA downstream 545682 50695224 ~ 50695567 (+) True G8509
TU10533 lncRNA downstream 609533 50759075 ~ 50759360 (+) True G8538
AMCG00004458 mRNA upstream 13491 50121429 ~ 50135834 (+) True AMCG00004458
AMCG00004455 mRNA upstream 116983 50004310 ~ 50032342 (+) True AMCG00004455
AMCG00004453 mRNA upstream 159661 49989275 ~ 49989664 (+) True AMCG00004453
AMCG00004448 mRNA upstream 161834 49984727 ~ 49987491 (+) True AMCG00004448
AMCG00004450 mRNA upstream 166167 49968474 ~ 49983158 (+) True AMCG00004450
AMCG00004459 mRNA downstream 35160 50184702 ~ 50187493 (+) True AMCG00004459
AMCG00004462 mRNA downstream 49963 50199505 ~ 50212190 (+) True AMCG00004462
AMCG00004464 mRNA downstream 62675 50212217 ~ 50214554 (+) True AMCG00004464
AMCG00004463 mRNA downstream 87382 50236924 ~ 50243043 (+) True AMCG00004463
AMCG00004468 mRNA downstream 109289 50258831 ~ 50265447 (+) True AMCG00004468
TU9962 other upstream 1215230 48932450 ~ 48934095 (+) True G8099
TU9841 other upstream 2002169 48146888 ~ 48147156 (+) True G7999
TU9559 other upstream 4181019 45962010 ~ 45968306 (+) True AMCG00004380
TU9000 other upstream 7458216 42688779 ~ 42691109 (+) True G7329
TU8899 other upstream 7932963 42212510 ~ 42216362 (+) False AMCG00004304
TU10340 other downstream 1722 50151264 ~ 50157719 (+) True G8377
TU10527 other downstream 594249 50743791 ~ 50753349 (+) False AMCG00004477
TU10626 other downstream 965399 51114941 ~ 51115262 (+) True G8606
TU10780 other downstream 1790019 51939561 ~ 51946818 (+) True AMCG00004501
TU10796 other downstream 1839811 51989353 ~ 52013630 (+) True AMCG00004509

Expression Profile