RNA id: TU10533


Basic Information

Item Value
RNA id TU10533
length 286
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G8538
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 50759075 ~ 50759360 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tacaccgatcagccataacattatgaccgctgacaggtgaagtgaataacactgataatctcgttatcatggcacctgtcagtgggtgggatatattaggcagcaagtgaacattttgtcctcaaagttgatgtgttagaagcaggaaaaatgggcaagcgtaaggatctgagggaagtgctggacaaacaagtccgatccatggaggccccacctcgcaacttacaggatttaaaggatctgctgctaacgtcttggtgccagataccacagcacaccttcagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10499 lncRNA upstream 63508 50695224 ~ 50695567 (+) True G8509
TU10416 lncRNA upstream 471004 50284425 ~ 50288071 (+) True G8443
TU10383 lncRNA upstream 521354 50236677 ~ 50237721 (+) False AMCG00004463
TU10343 lncRNA upstream 587124 50171520 ~ 50171951 (+) True G8380
TU10339 lncRNA upstream 609533 50149325 ~ 50149542 (+) True G8376
TU10616 lncRNA downstream 211596 50970956 ~ 50971302 (+) True G8596
TU10625 lncRNA downstream 355220 51114580 ~ 51114852 (+) True G8605
TU10683 lncRNA downstream 886489 51645849 ~ 51663424 (+) True G8658
TU10839 lncRNA downstream 1331525 52090885 ~ 52091291 (+) True G8764
TU10851 lncRNA downstream 1408956 52168316 ~ 52168540 (+) True G8775
AMCG00004477 mRNA upstream 5643 50741388 ~ 50753432 (+) True AMCG00004477
AMCG00004478 mRNA upstream 26275 50722025 ~ 50732800 (+) True AMCG00004478
AMCG00004479 mRNA upstream 49946 50698554 ~ 50709129 (+) True AMCG00004479
AMCG00004476 mRNA upstream 69190 50683804 ~ 50689885 (+) True AMCG00004476
AMCG00004474 mRNA upstream 80725 50673093 ~ 50678350 (+) True AMCG00004474
AMCG00004482 mRNA downstream 28671 50788031 ~ 50792555 (+) True AMCG00004482
AMCG00004485 mRNA downstream 89714 50849074 ~ 50850195 (+) True AMCG00004485
AMCG00004486 mRNA downstream 178653 50938013 ~ 50948526 (+) True AMCG00004486
AMCG00004489 mRNA downstream 560497 51319857 ~ 51326045 (+) True AMCG00004489
AMCG00004488 mRNA downstream 602380 51361740 ~ 51390889 (+) True AMCG00004488
TU10527 other upstream 5726 50743791 ~ 50753349 (+) False AMCG00004477
TU10340 other upstream 601356 50151264 ~ 50157719 (+) True G8377
TU9962 other upstream 1824980 48932450 ~ 48934095 (+) True G8099
TU9841 other upstream 2611919 48146888 ~ 48147156 (+) True G7999
TU9559 other upstream 4790769 45962010 ~ 45968306 (+) True AMCG00004380
TU10626 other downstream 355581 51114941 ~ 51115262 (+) True G8606
TU10780 other downstream 1180201 51939561 ~ 51946818 (+) True AMCG00004501
TU10796 other downstream 1229993 51989353 ~ 52013630 (+) True AMCG00004509
TU11143 other downstream 2424034 53183394 ~ 53183983 (+) True G9012
TU11164 other downstream 2504947 53264307 ~ 53270070 (+) False AMCG00004546

Expression Profile