RNA id: TU4545


Basic Information

Item Value
RNA id TU4545
length 2575
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G3754
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 21595856 ~ 21598430 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAAATCTTAAAACTGTTCACTTTAAAATTAGAATAACAGTTGTTGTCTGCCAAAACCTACATTTCCTGGTTTTCATCCAACTTGACTGATGTCCTGACAGTTTTATCTTAACAGAAACCAACACAAGAAGAGGGTTATATATGACAAGGTCTGTATGCTTTCCCATGATTCACAAGTAGGGTGAGTTGTAGAATTTTGGAGTACAGTTTAGTCTAAAATTTGTTTTGGGAGCATGATatggcagtaaaatccaaacCCAATGCAATAATGCCATACCCatgatttgcattttgtgcAAGAGAATTTATAGATACATGGGGTACAATGCTGTGGAGATGAAATACAGCCACTTAAAGGAAACAGCTGTTTTAGAGGCTTCCTTAGATCCCAATccaataaatgtattaaattaaataattccagcctgtttttatgttttaaaagagcAGAATTATCAATCACCAGTGTCATGGAGCTACTTACTTAACCTATTCAGAGAAGTTGAGAAATGTGGCATCTCAGAATACATTGGCTTTTATAAACCGTGTTACATATTTACCAACATTTCATCTTTTCAATCTGTCATACAATCTCTGGCCATACTGCTGTCAGATCTGTTGATGGTATGagaatgattattatattttaaggtttaaagtttaaagtagaaacatattctgtggagtgagtttttcatgtccagctcattctatttaccagaaatcagagaaaaATATGCCACAACATCATtgggagctgctttgctgggaGTCAATGGAGAAAATCAGATAAGTCatgaaaatcattaaacaaGCATTTTATGCACCTTCGATTGCCcacatcaccctatttttccagAAGATCCAttggtttgtagtcataaaaaatgtatttcaccacccagaactgtcactattattttacatgattattttattcagggGACTTCCGTGTTGGCTACAGCAGAGTGGACAGAGTGGCTCTTTGGACAATGCGCGTGGACAGTTCACACTCTGCTGTAGCCTACACGGCAAtgcataatttttttaatgattcccatgacttttctgattttctccatTGATTCCCAGCAAAGCAGCTCTAGAGTTAGCGCCCCAGTGACGTTACAGTATATttttcgatctctgatttctggtacatagaatgagcttgatatgaaaaactcactccgaAGAATATGTTTCttcttatagaataacctgagaaaatatgaattttcggtggagttccctTTAAGGTTTTGTGACAAAACAGGATCaccactttattttttacttatgtGCTGGTTTTGTCAATCAGAGGAAACAGCAGCTGTATTAATGGGCCAGTGAGAAAgtactgtttatttatgcatacatgtatatatttatacatacatatttattttctcaaccCTTAACAAACTTTCCTATTGTCATCCCTCCAAGACACAGTTAACCTGTTTGCTCTATCTTAAAAGCTCCACTATTTAGATCCTCAATTTCCTGAAGGTGGTTTCCAACTAGGACAGCAAAACCAAGATAAGACTATTTAAAGCTCAGCTGATGGTTACAGTATTCATATGCGGatcagtacatttatttttgacagcTACAATATATATCACAAACGAATggggatgaaaaataaatacattaaatccaaTAAATTAATCTAGGGTAGTAGCTTATAATTTTACATGCAGGTCCAAATGCATTGAGGTAATGCACTCAAGTAGGTCTTTCATTTTCAGGTTACAGTTTAAAAgtaagacaaagaaagaaaggggggcACTTGAAATATCATTAAGGCAGAAATTGTTTTAGTCTTAGGTTTCAGTTTCTACTGCACCTAATATATGTGTCAAGAAAGATCAGGTAACATCaatcacaaataattaaattatgtagattaataatataatatgctGACTGGGCAGTATTGTAAAGTATTGTATTGATTATCCAGATACCAAAAAACCAAGCTTAAAATATTAATCGTGTTAGGGTTTCAGGATGTCAGTGAAGTAAACACCTTGATTACAGGGAATGTCATTGGCTTTCAGTTATCTTTCCTTGTCATTGTTATTCGTCTTTTTAGCAGTTCTGTGTGGAATCAGTGCTCAGGTATCAACAATGTTTACTTGTTGAACCTAAGGTGAGATAAACCATGTAAGTcacatgtaattaatttacattgtttatAACATGCAAATATTGATTCTATTGTTGTGaacacatcaaaaacaaaaaatgtaatgtttcttgtgttttttttttttgtcagctgTATTGTTATGCATTCAAATGGGACATACAAGCAATTCCTGTTTAAAATAGGTCTGTATATTGTACCAGATTTGGCTAGCTATTTTGCTATGGAGCTTTAATTAGTTATATTACATGTGGCTATTTTTGGAAAACGGGAAAACGTAATGTCTAAACAAGATTctcaaataaaatagtaaatcGGTAagtttattcacatttttattatgagaaatgtattacaaatattaaatgtatgtctctatttttttctttttatagaaaacaataaactgtCAACTACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4463 lncRNA upstream 505602 21089595 ~ 21090254 (+) True G3690
TU4443 lncRNA upstream 668054 20925812 ~ 20927802 (+) True G3670
TU4439 lncRNA upstream 682868 20912142 ~ 20912988 (+) True G3666
TU4432 lncRNA upstream 687339 20903572 ~ 20908517 (+) True G3661
TU4413 lncRNA upstream 735562 20835737 ~ 20860294 (+) True G3648
TU4549 lncRNA downstream 2202 21600632 ~ 21600860 (+) True G3757
TU4559 lncRNA downstream 134061 21732491 ~ 21732699 (+) True G3767
TU4562 lncRNA downstream 152097 21750527 ~ 21759799 (+) True G3770
TU4577 lncRNA downstream 292093 21890523 ~ 21901648 (+) False AMCG00003853
TU4605 lncRNA downstream 318846 21917276 ~ 22016452 (+) True G3798
AMCG00003847 mRNA upstream 60098 21491884 ~ 21535758 (+) True AMCG00003847
AMCG00003846 mRNA upstream 148735 21440114 ~ 21447121 (+) True AMCG00003846
AMCG00003845 mRNA upstream 157177 21348227 ~ 21438679 (+) True AMCG00003845
AMCG00003843 mRNA upstream 262632 21314074 ~ 21333224 (+) True AMCG00003843
AMCG00003844 mRNA upstream 299638 21288460 ~ 21296218 (+) True AMCG00003844
AMCG00003854 mRNA downstream 259060 21857490 ~ 21862799 (+) True AMCG00003854
AMCG00003853 mRNA downstream 292129 21890559 ~ 21901865 (+) True AMCG00003853
AMCG00003855 mRNA downstream 351901 21950331 ~ 21958985 (+) True AMCG00003855
AMCG00003856 mRNA downstream 372066 21970496 ~ 21981590 (+) True AMCG00003856
AMCG00003861 mRNA downstream 502858 22101288 ~ 22106730 (+) True AMCG00003861
TU4541 other upstream 46323 21549201 ~ 21549533 (+) True G3751
TU4227 other upstream 2226590 19368193 ~ 19369266 (+) False AMCG00003828
TU3794 other upstream 3443542 18146660 ~ 18152314 (+) True G3108
TU3792 other upstream 3453223 18137755 ~ 18142633 (+) True AMCG00003779
TU3719 other upstream 3911868 17681817 ~ 17683988 (+) True G3047
TU4563 other downstream 147420 21745850 ~ 21760630 (+) True G3771
TU4606 other downstream 324206 21922636 ~ 21923787 (+) True G3799
TU5028 other downstream 2111808 23710238 ~ 23713134 (+) False AMCG00003898
TU5311 other downstream 3084970 24683400 ~ 24683920 (+) True G4360
TU5497 other downstream 4195622 25794052 ~ 25795791 (+) False AMCG00003930

Expression Profile