RNA id: TU6999


Basic Information

Item Value
RNA id TU6999
length 1685
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G5707
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 33597892 ~ 33600011 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGCCTGAGGCTCATGTTTAATTTCCAAACTCTCTGCCACAATCACAAATGTCAAAActatacagagaaaaaaaacatgtattttagaaacacaaaacaataacatgaaaaTAGAAACAAGATAGGGACCATGGTTGACATGATAATGGTGgtgtaaatattgaaatgccCCATTCATTTAAGATACAGCTGTGTCTTGAAAAACAAGGCAGTTCTGAGTTCTTCAATGCTTGTTATATCAGAGACCTGTTTGAAGAGAATGTAGAACTTAATTTTTCTTTACTAATCCTACTATTGTTTCCTGTTAGGGGCCATTCTGTGACATGGTCAGGAGTTGTGGGATATAGCCCATGTGTGCATCGGGGGCACcagctttaaatgtaattcccTTTTATTTTCTACAGCCTAGACATAATGATTTTGTGAGAACTATATTTAAGGGTGTAAGTACTTTTAATGCATTaagataatgataatatataatCTATGCTTAACATTCTATTGTGGAGGGGCAGAAACTCTAGAATCTGGGAAGAAATGTTACTGAAAAAGGGTATTTCtacattgcttttatttaatttgcattttgctCATATAATGGAAGATACGACCCTAAAGTAGCATGTACATAATAACTATGATATAAGAAGTGTTAGTTTATTAGTTATCTTATGTCAGAATCACACTGTACTTGgccattacaaaaatacacGTTCATGACATGTTTATAGCTGCATTGACATTCAATTATGTGAACTGATGTTGATGTTACTTTGTAATTTAGCTTTCATGGGCTTGAAAggtaaatgtttaaatggtgTACATTTCACATAGTTTATTGCcacatataaatgttttacaggTATCCAAAGTAGAATACacattatgtaaattaatactGCACATACCTGttagcatttttcattttacatttaaataaaaagcatactAATTGAGGTTTATGTCACTGGCACTTTAAtcttatttgtaaaaaaataatcaaaaaatcAATTTCATAACAGCTGCTACAACTTAGAACAACCCCCAGGCTATGAATTGGAACCTGTCAGCGATGCATTAAAGCAATTGCTACACAGTATCTTCACATATCAGCTTTCACATTAGATACAGTACCCAGGGGGTCTGGTTTAATATTTCAGGGTTAATTTTAGAATCACAAAATGGTGTTGGAGGTGCTCCACAATgacataatgaaatgtatttagcGGAAGAATGAAACACATGGGATTGGGCTGACAATTTTATTGTCCTGTATCTAGTGCAATGACAGATTTAAGGCTTTCAAGCAGGTAAAACTTACTGATACTGTAGAATGGCAGGGTGTTGTGCGCTGTAGAGTACAAGTAGAGTTAGGTTAACAGAGAGTAATACATCATAGCAACAAGCTGACTGCTACAGAATGAGGTGACTGAACTTGATGTGTGCAGGCAGGATGAGTTGTGTTAATGAGCTTAATTAAAACGATCTTCCCAAAGATCCCAGGAAATCCCATCTCCTCCTCAGATTCTACTTGTTGTGCAGTCTGTTTTCCAACTGTTGCATTTTTCTTGCAACTTCATCTAGTCTGCTTGCCAGGGACTGAATGGAGGACTGCACggttttctgaaatgcaagcTGGGCCTCACACTTGCATGGGTCCACTGTCACCCTTGCCCTCACTTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6976 lncRNA upstream 30413 33566173 ~ 33567479 (+) True G5688
TU6969 lncRNA upstream 122845 33474842 ~ 33475047 (+) True G5681
TU6968 lncRNA upstream 124562 33473036 ~ 33473330 (+) True G5680
TU6947 lncRNA upstream 152472 33438328 ~ 33445420 (+) True G5662
TU6819 lncRNA upstream 985841 32611833 ~ 32612051 (+) True G5569
TU7014 lncRNA downstream 26356 33626367 ~ 33627507 (+) True G5720
TU7032 lncRNA downstream 85716 33685727 ~ 33768814 (+) True G5731
TU7059 lncRNA downstream 169578 33769589 ~ 33771848 (+) True G5750
TU7098 lncRNA downstream 292463 33892474 ~ 33893143 (+) True G5768
TU7121 lncRNA downstream 478340 34078351 ~ 34080785 (+) True G5787
AMCG00004109 mRNA upstream 32029 33561024 ~ 33565863 (+) True AMCG00004109
AMCG00004108 mRNA upstream 145220 33435750 ~ 33452672 (+) True AMCG00004108
AMCG00004100 mRNA upstream 350328 33241032 ~ 33247564 (+) True AMCG00004100
AMCG00004101 mRNA upstream 455354 33137636 ~ 33142538 (+) True AMCG00004101
AMCG00004099 mRNA upstream 462401 33132355 ~ 33135491 (+) True AMCG00004099
AMCG00004110 mRNA downstream 147898 33747909 ~ 33761457 (+) True AMCG00004110
AMCG00004113 mRNA downstream 167035 33767046 ~ 33767636 (+) True AMCG00004113
AMCG00004115 mRNA downstream 305280 33905291 ~ 33912885 (+) True AMCG00004115
AMCG00004121 mRNA downstream 519560 34119571 ~ 34130023 (+) True AMCG00004121
AMCG00004122 mRNA downstream 531115 34131126 ~ 34133612 (+) True AMCG00004122
TU6919 other upstream 466706 33130120 ~ 33131186 (+) True G5642
TU6554 other upstream 2703065 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 3326368 30271210 ~ 30271524 (+) True G5245
TU5898 other upstream 5494681 28062363 ~ 28103211 (+) True G4831
TU7209 other downstream 1252852 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 2152522 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 2672181 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 3173990 36774001 ~ 36774523 (+) True G6314
TU7756 other downstream 3261536 36861547 ~ 36891746 (+) True G6328

Expression Profile