RNA id: TU7929



Basic Information


Item Value
RNA id TU7929
length 394
lncRNA type inter_gene
GC content 0.31
exon number 4
gene id G6471
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 37514882 ~ 37516498 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTTACATTCAACATGTGACTTGCAGTGTATATCATAAAACTATAGAGTTTTATGAACCTTGATTCTTGGCTAACAGCAGATAAGTATATTATAACCTTTAACACAGGTTTTAACAGCTAATGTTAGATTTAATTAACTTGGTCAAGAGGCAAAGTTTACTCAGGCTGAGGCATTTCAACTTAATACATCTTAGTTTCCACTCTTTTCAAAATGGGCTTGTTTCaacttgtgtgtgttgtaggGCTGTTGGAAGTGTCCAGCTCGTACACGATTCTCCAGTTATCTGAAGAAAATGAAGTATATGCTTTTGATGAGGAAAATGTCAGATTTGACATACCCTACCTAAATTTAGctGCAAAAACTCCCTTAATTGAAGGTGACATGGCTATTCCTG

Function


GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU7873 lncRNA upstream 170437 37344061 ~ 37344445 (+) True G6428
TU7870 lncRNA upstream 173868 37337526 ~ 37341014 (+) True G6427
TU7861 lncRNA upstream 196736 37315645 ~ 37318146 (+) True G6421
TU7844 lncRNA upstream 249378 37158176 ~ 37265504 (+) True G6405
TU7820 lncRNA upstream 486636 37028039 ~ 37028246 (+) True G6383
TU7999 lncRNA downstream 328011 37844509 ~ 37847720 (+) True AMCG00004210
TU8059 lncRNA downstream 738731 38255229 ~ 38255483 (+) True G6573
TU8071 lncRNA downstream 900100 38416598 ~ 38418776 (+) True G6585
TU8073 lncRNA downstream 949898 38466396 ~ 38466643 (+) True G6586
TU8085 lncRNA downstream 1099746 38616244 ~ 38616464 (+) True G6598
AMCG00004205 mRNA upstream 29250 37478830 ~ 37485632 (+) True AMCG00004205
AMCG00004206 mRNA upstream 36195 37476289 ~ 37478687 (+) True AMCG00004206
AMCG00004199 mRNA upstream 69595 37427449 ~ 37445287 (+) True AMCG00004199
AMCG00004197 mRNA upstream 96935 37394102 ~ 37417947 (+) True AMCG00004197
AMCG00004193 mRNA upstream 283674 37198923 ~ 37231208 (+) True AMCG00004193
AMCG00004198 mRNA downstream 13264 37529762 ~ 37545788 (+) True AMCG00004198
AMCG00004209 mRNA downstream 50835 37567333 ~ 37570266 (+) True AMCG00004209
AMCG00004208 mRNA downstream 54305 37570803 ~ 37607222 (+) True AMCG00004208
AMCG00004210 mRNA downstream 316125 37832623 ~ 37846771 (+) False AMCG00004210
AMCG00004215 mRNA downstream 572365 38088863 ~ 38186137 (+) True AMCG00004215
TU7800 other upstream 514724 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 623136 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 740359 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 1239952 36272192 ~ 36274930 (+) False AMCG00004167
TU7437 other upstream 1748702 35752533 ~ 35766180 (+) True AMCG00004158
TU8679 other downstream 3943078 41459576 ~ 41507231 (+) True G7094
TU8899 other downstream 4696012 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 5172281 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 8445512 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 10630390 48146888 ~ 48147156 (+) True G7999

Expression Profile