RNA id: TU9305


Basic Information

Item Value
RNA id TU9305
length 4882
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G7569
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 44078345 ~ 44088037 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTAAAACAACCTTTAATGGTTTAAAAGCAACGACTGGATCCCACCCCAGGACAGTTTCTACAATACTGGATCACAGTTATGGCCACCTCAGCACATATACATTCAGCAGGGTTGCcaatctttgttttaatttcatttaattatacacTTTCATAAAATGCACCACCCACAGCTGTTCGGGTACACAACTAATGTCTCCATCAACAGTACGAAAGCTGTAGTTTAGGGGGTCTAGGGGGTGTAATCTAAAACTTGCCAATCCCACGTTTCCTATTTCTATCCAGTCCCCTGGTACTGGTAGGCATGGCAGGATGACATCCCTATAGCATGATATATATAACAAATCATAGTTAGAGTTTTTAccacatatacattatatacagtggaATGTTAAGCTCTGATTCCAGAGTGTGCTAAAGCAATTTAGCAGACATATGACATGGAATTCTAATCGGAaatttaaaactggaaaactgcccccaaaatatgaacaaaataaaaaagtataacaagaaaacaagaaaagaacagaaaacttTCAGGTTACACATCGTTCAGAACCTAACCACACAGAGTCACCCACAAGAGATCGGGACTGATAACACACCTGCTTCATTCATAATTTCATACACTCAGCAAGGACATCTATCTAAGGGACAACACTGACACAGATTGGGACAGCTGGCTTGGACTAGTtcaaaagtgtgtttttaatacttttaaaatgtctgctgtAAAAGAAGACGCTACTGATAGCATGTCCTGAATCCACCATCATGAGCAACTGGTTTTGTTGCTGTAGTCTTTCTAGTAgcagatttttatttgaaatacatcttGTCCTCGTTGATTCTGTTCTGGAATACCAGACCTTATGtgattcaataaatacaagaggGCTCAGAGTGGAAAGCAAGTCACAGGAGAATTGCGATTGCCTAACCAAAGTTCCCCCATTGCCAACAAACACAGTCACTTGCTCTGCTTTCTCTTTAGGCAGCTGTCCTGCTCTTGCCAGTAAATCCTTTCTCTCTCACAGTCTCATTTTATTTACTCTTATAAGAAAGATCCGGAAACACAACGTGTAGTTGCCATACGGATGCTTAAAGCTTAATGATAAAACTACTCTAGTTTCTAGTCAGGGTTGAGACTCCCGTTTCTGTCGATTTGCAGATGGCTCTGCCGAGTATCCGTGGTGCCAAGAAAACCAAACTGCACCACTGCCTATCTCCCTTGTATCTTCACCTGCTAGTTTACAAAAATGGTATTGAGCATTCAAAAGCACTGGGCTGCCCCCCGGAGACTCCGATAAGGGCTGTGATTTGATGATGCTTTGAGGTGGAGCGTTTTGTTTTGCATGGGGCAGTTCCCAGTGAGTCACACTGCAGGTTGATCTTTTGACAGGGATAgttttatatttcctttccattgtaaggacagagaggaaaaataatacatctacCTTATGGCAGAGACACGCAGGGTCCACAGTCATTGGTGCATTGATCTGTGTGCATCTCCTACTCAGGGAGGTACAGAAGTCCCGGGAGCATTGAAAATAGAACCTGCACATTGCACCTGTTTTCTTAAATAAGGGGCAGCACTAACTTCAGTTTGCAGGACCACAGTACTGACTGGTGATTAACGTCTTTAAAAACTGCTGGCACCCATTGTCCCCTGCCCAACAGCAAAGACCTGCAGATGAGCCTTACAATGCTTTCAGGTGTTGAAATCAGTGAGTGTCCCGATAGTGACGAACTCTGGCACTCAGCTAAATCCTTTTCCGAGTGCGGTCTTCAGATCCAGCTCTGAGGCGAGCAGCAGAGAGAGCTGCCTCTTCAATCCGAGCCACAGAAACCGATTGATCACCATGGCTGAGAAACTGAGCAACACAAGttaaagcaaaactaaaacaagaaagaaagaaagaaagaaaacacaaaacaaaccaagtagcatatatatatatatatatataattttttttgctttccagTCAGGCAGGTTTTTATGTCCTTGTAtgaagtttttttgtttctgtattgttgtattcctccctctcttttgGTTTCCTGTTGCATCTCTTGTTCGTTTTAATGAGAGTCTCCTCTGGCTGTGTGCAGGTCCTCTGGGAATCCAGCAAGGCACTGTGGAGAGAACGTTTTGCATTGCAGCTCCTTTTCCATGGTGGGAATCATCTGACAGGCCTCTCTCCCCTGACGGGCTGCCTGCGCTGCTGCCAATCCTGCACTCCCAGAACCGTGCAGCTGCCTTTGTGCAGGACCGCTCCAGAGTGACGTGCAGGCCAGGAGAAGGGAGAGGAAAAATGAACCTCTCCCTGCTACGAGATGCCATGCAGGCATAACTCAGTTCCATTTATGCTTCTCTCTCCTGTGTTGTGTGCAACAAAACAGCCATGGCTATCAAAACAGctgcctgtgtctctgtgtttgcatGTCCTCAGCATCCTCCAAAGGCCCCGCAATGGGAGGTGACAGCTGCTGATAGAAAGATCTGTACTATGTGCCATCAGAAACAGAATGGCAGAATGGGGTTGTTTCAGATGTTGTGCTTTCCCTAGcaggatttaattaaactgtcacatatatatatatatatatatatatatatattgtatataggtacgtatacattgttttttagttGGACAGGTAGCCTTGCTGAACATAACCAATCCAAACACATTACAGTAGATTCAAATTGTTCCATTGTCACTGTCCCTTACTTTTAAGCAattgattaaaaagaaacaaattaaaaatatatttatacaggcaatgaaagcaaaatgtattctgattACAAAGCAAACCCCTGCACccatctgtttttgtgtgtctgcttGTTCGGTGTCACTCCTTACATACGGCATGCTGAACAGAGGAGTCGTTACAAAGCCTGTTCAATTTTAAGCATGACAACAGCCATGGACATTGGGAACATTGTTGAAGCAATATGAAAAATACTGACATTTTCATGATGCAgataaagagagaaataaaggcACTTCCCTCTTTCCCATCCAGGGCTTAGCTCAAGTGGCCAGATCCTCTGGTTAAAACGAACACATTctgtgtccctccctccctcccagcaGTGCTACACATGAGAAGCCACTGACACAAAACTGGATAACACAAAATACTCAACAGTGCTTTTAATGTAAGCATCTcaaatgttgttcttttaaaCACTGATGCTGAACCACAGAGTGGGGGTGGTTATGATTTGCATTTCATATATCTTTGGAAATTTCGTTTTCAAGATTGAAGAGTCTTGGATTCTACAAGCCTGACCCCctatacagtatacaatacaCAGTAATGTAATACATTCCCAGATCACGATTCTCTACATGGCGATCACTGGTGTGGTGGGACAGGGGAGGGAGTGGGATATTCTTTATAAGATTGTGTTTGGAGGAATGATCTgatgctttttttattaaaacatcagTCAACACTGTTGGCAGACAACTCAAACAGGACTTGGTGAACCTTTCAGAAAATCTGACCACCCGTTCAGCTTTAAAACCCCTCAGCCCAAAAGTACCGTTTCCCTTATGCAGTTTCTGAAATATAAGGTAACAGCTAgctagaattaaaaaaataaaataacaaaaaacaggtACAAAAATTAtgataacaataaaaatgataataaaaaataaacctcatAATCATACATCCAGTGTAGGACTTTCACAATACATCCccccaaaaacaaactttaaaatgtagagcaaaatctctctttttttagttttgtgtttgtttctttgtttttacatagttcgtacatttatattaacatgataaagaaaataaccaaaaaaatatataaaaaaaatcacacataaaatacagttaTTAACAAGCAAACTGCCTTCTGGCCTAAAAAAAGTCAATGACAGTTGGCATCAGTCCTTGGAtacaccttttttttaataagcagaaGAATCTTTAATAGCATCTTAAAATATCATGATGAGGTGTTGTCAAGTAGATGTTGCAAGCTCTCTCAACTCGATGCTTTAATTTCTTGTTGTTTACTTGATTGAATGCGTTCAGATGGGGGATGTTGGGCAGGGTTGAGGAATGGGTTTGGAGAAGCGATGGGAGTGAAGGGAGGTCAGGCCAGGGGAGTGTGTTAATGAGTGTGGGGGGTCAATGGAACAGGAGGGGGGGTTGCATGCCGCTACACGTACCACTCCTTCTTTGAAATGACAGAGCCGTCGGTTTGGGAGACCATGTCGTCGGCAATCTCGTGCTCGGGGTCGTACTGGAAAGCCAGAGTCCGTTCGTCGAAGTCACGGCTCTCGCCTTCATCCACCGTGAAGTAGGGTCTCTTCAGGTCCTCGGCATCAGGGTCGAAATCCCGATCGCTGCCCTCGAAGCCGCCGGGTCCCCCGACGGGCGCAGGCTTCTTCTCGTCGTCTGAGTCCTCGGGATACTGCAGGTTCTGGGGCAGCGGAGGGTGTGGGGGCAGCCCGCCGGCTTTGCTGTAGCCGTTTCCGAACACGTGCTTCTTGGTACTGTAGTCGCCCTTGAAGGTGCGCTGGCGGCGGCGCAGGAAGAcgaacagcagcacagcagccacGCCCAGCAGGACCACTCCCCCCACAGCACCCCCGATGGCGGCCCCAGAACTGCGCTCCTCCGCCGGGATCTCGCGCTCGCTGGGTGGCGGGATGTTAGGGAATTCTGGGTAGGAAAAGACAGATGGAAGgggacagtgtgtcagtgccccAGCgagaggaggtgtgtgtgtttgtgtttttttattttggaaagatGAGGGAAGGGAGACAGGGAAGGATAAGCAAAAGGGAAGGTAGTACAGGCAGGAATCCCCCTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9307 lncRNA upstream 1743 44078345 ~ 44081355 (+) False G7569
TU9208 lncRNA upstream 488020 43591750 ~ 43595078 (+) True G7485
TU9148 lncRNA upstream 736139 43346350 ~ 43346959 (+) True G7441
TU9117 lncRNA upstream 845445 43235818 ~ 43237653 (+) True G7418
TU8944 lncRNA upstream 1607212 42475576 ~ 42475886 (+) True G7293
TU9326 lncRNA downstream 248414 44336451 ~ 44336681 (+) True G7584
TU9368 lncRNA downstream 442303 44530340 ~ 44543143 (+) True G7614
TU9402 lncRNA downstream 486294 44574331 ~ 44574997 (+) True G7638
TU9408 lncRNA downstream 499669 44587706 ~ 44587984 (+) True G7644
TU9429 lncRNA downstream 528279 44616316 ~ 44617399 (+) True G7662
AMCG00004346 mRNA upstream 284623 43795221 ~ 43798475 (+) True AMCG00004346
AMCG00004343 mRNA upstream 361119 43671020 ~ 43721979 (+) True AMCG00004343
AMCG00004338 mRNA upstream 451202 43625615 ~ 43631896 (+) True AMCG00004338
AMCG00004342 mRNA upstream 472003 43610781 ~ 43611095 (+) True AMCG00004342
AMCG00004335 mRNA upstream 548440 43526980 ~ 43534658 (+) True AMCG00004335
AMCG00004351 mRNA downstream 322562 44410599 ~ 44411051 (+) True AMCG00004351
AMCG00004354 mRNA downstream 410391 44498428 ~ 44498907 (+) True AMCG00004354
AMCG00004353 mRNA downstream 423810 44511847 ~ 44512326 (+) True AMCG00004353
AMCG00004352 mRNA downstream 461395 44549432 ~ 44552133 (+) True AMCG00004352
AMCG00004355 mRNA downstream 530148 44618185 ~ 44640504 (+) True AMCG00004355
TU9000 other upstream 1391989 42688779 ~ 42691109 (+) True G7329
TU8899 other upstream 1866736 42212510 ~ 42216362 (+) False AMCG00004304
TU8679 other upstream 2575867 41459576 ~ 41507231 (+) True G7094
TU7800 other upstream 7082940 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 7191352 36861547 ~ 36891746 (+) True G6328
TU9559 other downstream 1873973 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 4058851 48146888 ~ 48147156 (+) True G7999
TU9962 other downstream 4844413 48932450 ~ 48934095 (+) True G8099
TU10340 other downstream 6063227 50151264 ~ 50157719 (+) True G8377
TU10527 other downstream 6655754 50743791 ~ 50753349 (+) False AMCG00004477

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00025903 True 1226 mRNA 0.48 2 NC_007129.7 43183749 ~ 43226503 (+)
grasscarp (Ctenopharyngodon idella) CI01000028_04128511_04130775.mRNA True 1342 mRNA 0.49 3 CI01000028 4128183 ~ 4130922 (-)