RNA id: TU184903


Basic Information

Item Value
RNA id TU184903
length 825
RNA type TUCP
GC content 0.62
exon number 6
gene id AMCG00005345
representative False

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21883199 ~ 21887568 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggtatgacattcgTAGTtatccaatcagttggcacatcccgttctaagtgtcaaaacactccatctctctcttcctccctctccattCATTGCGCTTAAATTGCGCTCAAATTGTCTCTGACTGTCCTGATCACTGTGTCTCcccaggagaaggagaagaagtaCATGCTGCCCCTGGACAATCTGAAGGTGCGTGATGTGGAGAAGGGCTTCATGTCCAGCAAGTACATCTTCGCCCTCTTCAACACGGAGCAGAGGAATGTGTACAAGGACTACCGGTACCTGGAGCTGGCCTGCGACACCCAGGAGGAGGTGGACAGCTGGAAGGCCTCTCTGCTGCGCGCCGGAGTCTACCCTGAGAAAGCCCCGgtGGACAGCGAGGACTCCGGCCCGCTGGACAACTTCTCGATGGACCCACAGTTGGAGCGGCAGGTGGAGACGATCCGGAACCTGGTGGACTCCTACATGGCCATCGTCAACAAGTGCATCCGCGACCTCATGCCCAAGACCATCATGCACCTGATGATCATCAACGTGAAGGAGTTCATCAACGCCGAGCTGCTGGCCCAGCTGTACTCCACGGGGGACCAGAGCGCGCTGATGGACGAGTCGGCGGAGCAGGCGCAGCGCCGGGACGAGGTCCTCCGCACGCACCACGCCCTGCAGGAGGCGCTGTCCATCATCGGGGACATCTCCACCTCCACCACCTCCACCCCCATGCCGCCCCCCGTGGACAACACCTGGCTGCAGGCCGGGCAGGGCGGCGCCCGCAGgtcgcccccccccagccccacgGCCCCCCGCCGCATGCAGCTGGGCTCCCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184849 lncRNA upstream 139819 21744879 ~ 21745451 (+) True G146928
TU184834 lncRNA upstream 172487 21710357 ~ 21712783 (+) True G146915
TU184706 lncRNA upstream 486299 21398676 ~ 21398971 (+) True G146815
TU184664 lncRNA upstream 556368 21326532 ~ 21328902 (+) True G146782
TU184620 lncRNA upstream 820362 21063973 ~ 21064908 (+) True G146749
TU184983 lncRNA downstream 60641 21948086 ~ 21948618 (+) True G147022
TU184985 lncRNA downstream 62883 21950328 ~ 21950587 (+) True G147024
TU184988 lncRNA downstream 69156 21956601 ~ 21957045 (+) True G147027
TU185037 lncRNA downstream 194199 22081644 ~ 22087344 (+) True G147066
AMCG00005344 mRNA upstream 6736 21873027 ~ 21878534 (+) True AMCG00005344
AMCG00005335 mRNA upstream 127388 21756187 ~ 21757882 (+) True AMCG00005335
AMCG00005338 mRNA upstream 144442 21737684 ~ 21740828 (+) True AMCG00005338
AMCG00005337 mRNA upstream 147620 21733381 ~ 21737650 (+) True AMCG00005337
AMCG00005336 mRNA upstream 157400 21722580 ~ 21727870 (+) True AMCG00005336
AMCG00005349 mRNA downstream 29670 21917115 ~ 21919897 (+) True AMCG00005349
AMCG00005348 mRNA downstream 33439 21920884 ~ 21928473 (+) True AMCG00005348
AMCG00005350 mRNA downstream 44921 21932366 ~ 21937327 (+) True AMCG00005350
AMCG00005351 mRNA downstream 79413 21966858 ~ 21969666 (+) True AMCG00005351
AMCG00005356 mRNA downstream 133417 22020862 ~ 22024488 (+) True AMCG00005356
TU184875 other upstream 37134 21811732 ~ 21848136 (+) True G146952
TU184830 other upstream 180876 21680708 ~ 21704394 (+) True AMCG00005340
TU184762 other upstream 312949 21570530 ~ 21572321 (+) True AMCG00005329
TU184679 other upstream 544558 21337432 ~ 21340712 (+) True G146790
TU184526 other upstream 1082090 20797458 ~ 20803180 (+) False AMCG00005280
TU184980 other downstream 58113 21945558 ~ 21947991 (+) True G147021
TU184986 other downstream 65124 21952569 ~ 21952882 (+) True G147025
TU184992 other downstream 69995 21957440 ~ 21984144 (+) True G147029
TU184996 other downstream 80857 21968302 ~ 21969692 (+) False AMCG00005351
TU185050 other downstream 251742 22139187 ~ 22144833 (+) False AMCG00005365

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000237_00209259_00234744.mRNA True 3376 mRNA 0.54 23 CI01000237 208984 ~ 234744 (+)