RNA id: AMCG00005365


Basic Information

Item Value
RNA id AMCG00005365
length 1693
RNA type mRNA
GC content 0.59
exon number 6
gene id AMCG00005365
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 22132565 ~ 22145610 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGGGGATCGCTCCCTGCTGCTGCCGTGTCTGCTGTACCTGTCCCTCACCGCCGCCCCCCCTGACGCTCAGGCTGTCCCTACGGGGGGCCTCGTCGGGGAGGGCAGTAGTTGCGGGGGGGTGCTGGGCTCCACTGGTAGGGGGGCGCGCTGTGAGCCTCACCTCGCCTGCCTGTCCGCCATCCACTCCACGCCTGTGGAGCCCCCCCTCACTGGAATGTGCCTACCTCAGCCCGTCCGTGTTGTCAGCGGAAGCTCTTCGGCCCGACACGGCAGCGCGGCGCAGCTCGGATCACATCGGCCCGCTTCGTGTGAAAACCAGACCCTCGTCGAGATGGTTCTGCTGACGATGATCGCCCGGGTGGCGGACGGGCTGCCGCTGGCCGCCTCGATGCAGGAGGACGAGCAGGCAGTGTTGTGGTGTGGTAGTGGACATGTCATTCGAGCCTCTGTGGGCCGCGGCTATGTGATCGAGAGGGGTGTCTGCTACTTGGTGCTGTGTGAGGCCGGATTCCCCAAGAAGCTGGCCTTCGCCTACCTGGAGGACCTGCAGGCCGAGTTCGACGAGCAGCACGGCAAGAAGGTGCCCACCGTGTCCCGGCCGTACTCCTTCATCGAGTTCGACACCTACATCCAGAAGACGAAGAAGCTGTACATCGACAGCCGCGCGCGAAGGAACCTGGGCAGCATCAACACCGAGCTGCAGGACGTGCAGAGGATCATGGTGGCCAACATCGAGGAGGTGTTGCAGCGTGGAGAGGCGCTGTCAGctcTGGACTCGAAGGCCAGTAACCTGTCCAGTCTGTCCAAGAAGTACCGCAGCGACGCCAAGTACCTGAACACGCGCTCCACCTACGCCAAGCTGGCTGCCGGCGCCGTCTTCATCGTCATGCTCATCGTGTACGTGCGCTTCTGGTGGCTCTGAGGGGGGGAGGAGggatggggagaggggggaggagagagaggaggagagaagagaggaggaaGGCAGGTAGGGGTAGTGAGACCATGTGACTCGCGCTCCCCtctgtataaataatataaatctctatgtaattattttatttcatgatttatttttgctgattTTTATGAGCCGCACCGACGACCCTCTCGTTGGGTGTACGGTGAGAGCGCGAGTGTCAGTGCGTCGGCCCCTGCACACAAAGGTTGAAAGCGAAAGCGCAGTTGTGCAGACAGGCCGCTCCCCCATCACTGCACTGGTTCTGGACAATCCCGTTCCTCAGTTGTCCCCCGCCCCCCGCAGGACAGTGCGTTGTGTTACAGCAGGGGAGgggtgctgtctgtctgtctgtatccgTCCGTCTGAGGAGCGCCTCCTCGACATGTCTTAAGTCTGGATTCCTGGGTCACGTGACTTTTCTGGTTTTGTTCTTTGCCTCCCGTTTGGAGTTGGGATGCCTCAGTGTGTGAGAGCACACCCCAGTCCTGTAACACGTGTGTGTGAGCGTGCGTGtcttgtgtgtgcgtgtgggggCGGCAGTGATTTAATCATTTACTAGCAATAACTGCTGTGTCACGCACTcggtctctctgtgtctttgcgTGTGCGTGTTCAGTGTGAGGGAGGCTGCGAGTGTCCTATGGCTCAGTGTTGGAGTGGTTGAGTGTCTGTGTTCAGGACTAGGCTGTTAACTGCTTTGACCAGGAATAAAGATGTTAACACTGTA

Function

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0048280 vesicle fusion with Golgi apparatus biological_process
GO:0015031 protein transport biological_process
GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0000149 SNARE binding molecular_function

KEGG:

id description
K08517 SEC22; vesicle transport protein SEC22

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185037 lncRNA upstream 45221 22081644 ~ 22087344 (+) True G147066
TU184988 lncRNA upstream 175520 21956601 ~ 21957045 (+) True G147027
TU184985 lncRNA upstream 181978 21950328 ~ 21950587 (+) True G147024
TU184983 lncRNA upstream 183947 21948086 ~ 21948618 (+) True G147022
TU184849 lncRNA upstream 387114 21744879 ~ 21745451 (+) True G146928
AMCG00005370 mRNA upstream 83 22130285 ~ 22132482 (+) True AMCG00005370
AMCG00005366 mRNA upstream 2316 22123782 ~ 22130249 (+) True AMCG00005366
AMCG00005364 mRNA upstream 9594 22116489 ~ 22122971 (+) True AMCG00005364
AMCG00005357 mRNA upstream 71098 22060209 ~ 22061467 (+) True AMCG00005357
AMCG00005358 mRNA upstream 101467 22024523 ~ 22031098 (+) True AMCG00005358
AMCG00005381 mRNA downstream 29876 22175486 ~ 22178376 (+) True AMCG00005381
AMCG00005378 mRNA downstream 36054 22181664 ~ 22198741 (+) True AMCG00005378
AMCG00005376 mRNA downstream 54575 22200185 ~ 22211145 (+) True AMCG00005376
AMCG00005377 mRNA downstream 78962 22224572 ~ 22229979 (+) True AMCG00005377
AMCG00005379 mRNA downstream 98694 22244304 ~ 22245551 (+) True AMCG00005379
TU184992 other upstream 148421 21957440 ~ 21984144 (+) True G147029
TU184996 other upstream 162873 21968302 ~ 21969692 (+) False AMCG00005351
TU184986 other upstream 179683 21952569 ~ 21952882 (+) True G147025
TU184980 other upstream 184574 21945558 ~ 21947991 (+) True G147021
TU184903 other upstream 245120 21885270 ~ 21887445 (+) False AMCG00005345

Expression Profile