RNA id: AMCG00005394


Basic Information

Item Value
RNA id AMCG00005394
length 996
RNA type mRNA
GC content 0.61
exon number 6
gene id AMCG00005394
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 248099 ~ 251173 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGTGTGAAGGGCTTCACTCTGTGTCGGCAGGTGTACCTGACCGGAGCCATGCTGAGCATCAACCCGCTGGAGAATCTGAAGACCTACATCAGCAGCCGTCCCCCTCTGGTCATCTTCATGGTCAGCGTGAGTGCGGTGGCCATCGCCTTCCTCACCATCGGCTACTTCTTCAAGATCAAGGAGATCAAGTCCCCTGAGATGACTGAGGACTGGAACACATTCCTCCTGCGCTTCAACGAGCTCGACCTGTGCATCTCGGAGAACGAGACCCTGAAGCATGGCCTGAACGAGTCCACCACGCCCGAGAGCACGGTGACCAGCGGCCAGGCTCGGCTCAGCACGCAGGCGCCGCCGCTGCTCGAGGACCCGGGCCCCATCAACATCTCTGTGCCCATCACTCTGACACTGGACCCGCTGCGGCCCTTCGGCGGCTACTCGCGCAACATCACCCACCTGTACGCCACGGTGCTGGGCCAGCAGGTGGGCCTCTCAGGCCGGGAAGCCCACGAGGAGATGAACATCACCTTCACGCTGCCGGCCTCCTGGAATTCGGACGAGTGCGTGCTGCACGGCCACTGCGAACAGGTGGTGTTCATCACCTGCATGACCATCACGGCCGCCAGCAGCGTCTTCCCCGTCACAGTCCAGCCCCCCCACTGCGTCCCCGAGACCTACACCAACGCCACAGCTTGGTACAAGATCTTCACCACGGCCCGGGACGCCGCCACCAAGTACACGCAGGAGTACAACCCCTTCTGGTGCTACAAGGGGGCCATCGGGAAGGTGTACCACGCGCTCAACCCCAAGCTCACCGTCATCGTCCCCGATGACGATCGTTCGCTGATCAACCTGCACCTGATGCACACCAGCTACTTCCTGTTCGTGATGGTGATCACCATGTTCTGCTATGCGGTCATCAAGGGCCGGCCGGGGAAGGTACGGCAGAGCAACCAGGACTTCTGCCCCGAGAAGgtggcTCTGTCAGAAGGATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191313 lncRNA downstream 135687 108398 ~ 112412 (-) True AMCG00005400
TU191281 lncRNA downstream 148429 95121 ~ 99670 (-) False AMCG00005399
TU191282 lncRNA downstream 148429 95121 ~ 99670 (-) False AMCG00005399
TU191242 lncRNA downstream 211704 35722 ~ 36395 (-) True G151903
TU191240 lncRNA downstream 215288 31994 ~ 32811 (-) True G151901
TU191337 lncRNA upstream 95824 346997 ~ 350322 (-) True G151970
TU191340 lncRNA upstream 126182 377355 ~ 377713 (-) True G151972
TU191347 lncRNA upstream 439486 690659 ~ 690942 (-) True G151979
TU191479 lncRNA upstream 747181 998354 ~ 1009739 (-) True G152071
TU191494 lncRNA upstream 814286 1065459 ~ 1070656 (-) True G152085
AMCG00005396 mRNA downstream 15724 227258 ~ 232375 (-) True AMCG00005396
AMCG00005401 mRNA downstream 96985 148035 ~ 151114 (-) True AMCG00005401
AMCG00005400 mRNA downstream 127552 111253 ~ 120547 (-) False AMCG00005400
AMCG00005398 mRNA downstream 141601 104130 ~ 106498 (-) True AMCG00005398
AMCG00005399 mRNA downstream 148551 94352 ~ 99548 (-) True AMCG00005399
AMCG00005395 mRNA upstream 9335 260508 ~ 267690 (-) True AMCG00005395
AMCG00005391 mRNA upstream 99592 350765 ~ 375012 (-) True AMCG00005391
AMCG00005387 mRNA upstream 147747 398920 ~ 400797 (-) True AMCG00005387
AMCG00005388 mRNA upstream 619984 871157 ~ 873005 (-) True AMCG00005388
AMCG00005454 mRNA upstream 720498 971671 ~ 973719 (-) True AMCG00005454
TU191268 other downstream 184371 62621 ~ 63728 (-) False AMCG00005407
TU191554 other upstream 968154 1219327 ~ 1258926 (-) False G152133
TU191607 other upstream 1120210 1371383 ~ 1371737 (-) False AMCG00005419
TU191743 other upstream 1254767 1505940 ~ 1507628 (-) True G152277
TU191734 other upstream 1361600 1612773 ~ 1615497 (-) False G152271
TU191793 other upstream 1457510 1708683 ~ 1721202 (-) True AMCG00005461

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00059626 True 1397 mRNA 0.49 7 NC_007116.7 60886103 ~ 60906496 (+)