RNA id: TCONS_00059626


Basic Information

Item Value
RNA id TCONS_00059626
length 1397
RNA type mRNA
GC content 0.49
exon number 7
gene id XLOC_030542
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 60886103 ~ 60906496 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAACACAGAAGGCATCCACAGTCAGCTTCCGTCAACCAGCAGCCCGCTTCCCAGTTGCAAGGCCACACAAAAACCGTGTTTCGAGATTATTATAACGTACTTGCAAATAATGGGAAGGAGTGTCGTGGACTCCTACATCGCTGTCAGCTGTTTGTTTGTCGCTCAGGCCCGCTAGCCTTCGAGTCTGTTAGCGTTAGCCGCCTGCAGCTGTCGTGCGCACTCGCGGAGCCAAAATGGTGTTGTTATTGAATCCACTGGAGAATCTGAAGACCTACATAAGTAACCGTCCTCCGCTGGTCATTTTTATGGTTAGCGTCAGTGCTGTGGCCATCGCTTTCCTCACTATAGGATACTTCTTTAAGATCAAGGAGATCAAATCACCTGAGATGACTGAGGATTGGAACACATTCCTTCTCCGATTCAATGAGATTGACTTTTGCATCTCTGAAAATGAGACGCTCAAGCATGGCTTGAATGAGTCCATCACGCCAGAGAGCACAGTTACCAGCAGCCAGACGCGATCCAGCACCCAGTCGCCACCTCTACTAGAGGACCCGGGTCCCATCAACATCTCTGTGGCCATCACACTGACCCTAGATCCGCTGAGGCCATTCGGTGGCTACTCACGCAATATTACTCACCTTTATGCCAGTGTGCTTGGGCAGCAAGTTGGCCTTGCTGGCAGAGAGGCCCATGAAGAGATGAACATCACTTTCACACTGCCGGTAGCCTGGAACTCGGATGAGTGTGTTCTGCATGGCCGCTGTGAGCAGATGGTCTTCAGCACCTGTATGACCGTCACAGCAGCCAGTAATGTCTTCCCAGTCACAGTGCAACCGCCTCACTGTGTCCCAGAGACCTACAGCAATGCCACGTCCTGGTACAAGATTTTCACCACAGCACGAGACTCGGACACCAAGTACACGCAGGAGTACAACCCGTTCTGGTGTTACAAAGGTGCCATTGGGAAGGTGTATCACACGCTCAATCCCAAACTCACTGTCATCGTTCCAGATGACGATCGATCACTCATTAACCTGCACCTCATGCACACCAGCTACTTCCTGTTCGTGATGGTCATCACGATGTTCTGCTATGCAGTCATCAAGGGCAGACCTGGCAAAGTTCGACAGAACAACCCTGATTTCTGTCAAGAAAAGGTGGCCTTGTCAGCAGGATAAACGGGGTCAGAGGTGAACACCTGAAGCATATCGGAAAGGGAAGTGAGAATACTACATGTTGCCTACTGAACCCAGGAGAAgggtgcaaaaaacaaaaacaaaacacaaaaaatgctCTGTGAATGAATTTCTGCAATGTTGGGTCACTCCAACCAAAGACTTTTAAGTGCCTGTATctactgtgtaaataatcataaaGGACTCGAGTACAGAAGC

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050320-103 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM248 (transmembrane protein 248).

Ensembl:

ensembl_id ENSDART00000009298

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061819 lncRNA upstream 108580 60763937 ~ 60777523 (+) False XLOC_030539
TCONS_00061820 lncRNA upstream 108580 60764178 ~ 60777523 (+) True XLOC_030539
TCONS_00061818 lncRNA upstream 172363 60702425 ~ 60713740 (+) True XLOC_030538
TCONS_00061817 lncRNA upstream 659630 60225573 ~ 60226473 (+) True XLOC_030536
TCONS_00061816 lncRNA upstream 807591 60074077 ~ 60078512 (+) True XLOC_030533
TCONS_00059634 lncRNA downstream 443237 61349733 ~ 61354529 (+) False XLOC_030545
TCONS_00061823 lncRNA downstream 443459 61349955 ~ 61354529 (+) False XLOC_030545
TCONS_00061822 lncRNA downstream 443459 61349955 ~ 61354529 (+) False XLOC_030545
TCONS_00061821 lncRNA downstream 443459 61349955 ~ 61354529 (+) False XLOC_030545
TCONS_00061826 lncRNA downstream 443464 61349960 ~ 61354529 (+) False XLOC_030545
TCONS_00059625 mRNA upstream 13011 60847823 ~ 60873092 (+) True XLOC_030541
TCONS_00059623 mRNA upstream 198484 60590796 ~ 60687619 (+) True XLOC_030537
TCONS_00059622 mRNA upstream 201132 60518611 ~ 60684971 (+) False XLOC_030537
TCONS_00059621 mRNA upstream 201132 60518611 ~ 60684971 (+) False XLOC_030537
TCONS_00059617 mRNA upstream 1290506 59553732 ~ 59595597 (+) True XLOC_030532
TCONS_00059627 mRNA downstream 12882 60919378 ~ 61329487 (+) False XLOC_030543
TCONS_00059628 mRNA downstream 22080 60928576 ~ 61329487 (+) False XLOC_030543
TCONS_00059629 mRNA downstream 27849 60934345 ~ 61035016 (+) False XLOC_030543
TCONS_00059630 mRNA downstream 28038 60934534 ~ 60940127 (+) False XLOC_030543
TCONS_00059632 mRNA downstream 395029 61301525 ~ 61329656 (+) True XLOC_030543
TCONS_00059624 other upstream 110105 60775881 ~ 60775998 (+) True XLOC_030540
TCONS_00059620 other upstream 1130842 59755144 ~ 59755261 (+) True XLOC_030535
TCONS_00059609 other upstream 1406274 59436500 ~ 59479829 (+) False XLOC_030529
TCONS_00059581 other upstream 2503457 58372223 ~ 58382646 (+) True XLOC_030512
TCONS_00059579 other upstream 2673819 58212161 ~ 58212284 (+) True XLOC_030511
TCONS_00059631 other downstream 353456 61259952 ~ 61260067 (+) True XLOC_030544
TCONS_00059636 other downstream 444872 61351368 ~ 61351501 (+) False XLOC_030545
TCONS_00059637 other downstream 445424 61351920 ~ 61351995 (+) False XLOC_030545
TCONS_00059638 other downstream 445835 61352331 ~ 61352465 (+) False XLOC_030545
TCONS_00059640 other downstream 447298 61353794 ~ 61353917 (+) True XLOC_030545

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU287979 True 676 lncRNA 0.50 3 CI01000059 4163856 ~ 4170960 (-)
bowfin (Amia calva) AMCG00005394 True 996 mRNA 0.61 6 CM030142.1 248099 ~ 251173 (-)