XLOC_030539


Basic Information

Item Value
gene id XLOC_030539
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 60763937 ~ 60777523 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061819
ctTTTACGGTTACAGCGTCTGAAATCAGACACAGATATTATGTGGCTGTAGTTCCACTGGCCAGGATGGGAGTGGAGGCACATCTGGTTTACGCAGCTGCAGAATTCTTTTAGAACTCAAATGAGCATACCATGGATTTAATGAGATGAAGGTTTTCAAAATGGGAGAGTGAGCTACATTGGCTGATTATTGAAAGGACGATTTACCACCTAATGAACCCTGGAGCCCTTACAGAAAGAGCGGAGGAGGGGTGGAGAGCTACTTGATGTTCCAGACCCTCTCTTTAAACACAACAGCACAGTGAAATGAGAGAGAATGAATGAGGACGCGCCTCTTTTATTGCACATGCTCTCTGTGACTATAGAGGCCAGCCGCTCTCACAGGAGGATAAAGAAAAAAGacatttgcttttttgttttataagtGAAATAGTCATAGCCAGAAGTAATTTATAGTGAACCGAGGGTTATTAACATTTAAAGAACAGCTGGGGACAAGGTACAAACCATTCGAATGCAAGAGCCGCCGCTTTGGTTTTAACAAAGGGACATTTTAAATGTGCCCTCAGTCATTTTTTCCCTCATTAAAAAGTTTTATGTATAACgacatgaatattttttttcgaaAATGTTAAACACAATGTACACTCAGATGAGATGAATACCACACTGATGCACTGTATTCAGGAAGTGAGCATAACTGGTATGTAGGTGTGCATGCGCAGTTGAAATTTAC
>TCONS_00061820
GAGAAAGAGAAGAACTCAAATGAGCATACCATGGATTTAATGAGATGAAGGTTTTCAAAATGGGAGAGTGAGCTACATTGGCTGATTATTGAAAGGACGATTTACCACCTAATGAACCCTGGAGCCCTTACAGAAAGAGCGGAGGAGGGGTGGAGAGCTACTTGATGTTCCAGACCCTCTCTTTAAACACAACAGCACAGTGAAATGAGAGAGAATGAATGAGGACGCGCCTCTTTTATTGCACATGCTCTCTGTGACTATAGAGGCCAGCCGCTCTCACAGGAGGATAAAGAAAAAAGacatttgcttttttgttttataagtGAAATAGTCATAGCCAGAAGTAATTTATAGTGAACCGAGGGTTATTAACATTTAAAGAACAGCTGGGGACAAGGTACAAACCATTCGAATGCAAGAGCCGCCGCTTTGGTTTTAACAAAGGGACATTTTAAATGTGCCCTCAGTCATTTTTTCCCTCATTAAAAAGTTTTATGTATAACgacatgaatattttttttcgaaAATGTTAAACACAATGTACACTCAGATGAGATGAATACCACACTGATGCACTGTATTCAGGAAGTGAGCATAACTGGTATGTAGGTGTGCATGCGCAGTTGAAATTTAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061819 False 735 lncRNA 0.41 2 60763937 60777523
TCONS_00061820 True 634 lncRNA 0.40 2 60764178 60777523

Neighbor

gene id symbol gene type direction distance location
XLOC_030538 NA coding upstream 50197 60702425 ~ 60713740 (+)
XLOC_030537 tmem132e coding upstream 76318 60518611 ~ 60687619 (+)
XLOC_030536 NA coding upstream 537464 60225573 ~ 60226473 (+)
XLOC_030533 NA coding upstream 541797 59605706 ~ 60222140 (+)
XLOC_030541 lig3 coding downstream 70300 60847823 ~ 60873092 (+)
XLOC_030542 tmem248 coding downstream 108580 60886103 ~ 60906496 (+)
XLOC_030543 doc2b coding downstream 141855 60919378 ~ 61329656 (+)
XLOC_030544 CR932980.2 coding downstream 482429 61259952 ~ 61260067 (+)
XLOC_030545 NA coding downstream 572210 61349733 ~ 61354529 (+)
XLOC_030535 CR854831.1 non-coding upstream 1008676 59755144 ~ 59755261 (+)
XLOC_030534 NA non-coding upstream 1128757 59634935 ~ 59635180 (+)
XLOC_030552 NA non-coding downstream 801923 61579446 ~ 61581273 (+)
XLOC_030553 NA non-coding downstream 802430 61579953 ~ 61580768 (+)
XLOC_030554 NA non-coding downstream 811085 61588608 ~ 61601237 (+)

Expression


Co-expression Network