XLOC_030552


Basic Information

Item Value
gene id XLOC_030552
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 61579446 ~ 61581273 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061828
gGTGTTGCAGGGAAACTTCTTTCAGAGCGACTGATACGGTTTTTTTTTtgacgacgacgacgacgacaACAAAAGAATAAGAAAAAACGGCTGAACATATTCCAATTGAGGACTTTTTCCCTAGTGGCACAAGTTGTGGATTATGCAGAGGTCTTTCTGGAAGATTTTGGGGAGTGGTAAACTCAGACTCTCATGGGTCTGGGAAAATTCCATGGCTCTATTTTTAGATGGGGAGTATCAATGCTCCATTTTTAAACACTCTTATAAGGGTCGGTAAAGGGCGCTTAATGTCCTGTAACGCTGTTTTGCCAAATTGCTTGACTAAAAACCATGTAACTGATGAAATGGTGACCACTTTTAGGTGGGTAAACTGCAAACTTAAAATGTGCCAAAATAAAGAACGTAAATTTCACAAACTCCACATTTTCATGCTGAGGTTTTTCAGGCCATTCACAAAGAATTTGACTGTTTCCCATTTTATGTTAGCTAGTATACACCCAAGTAAGGTAAAAGTTATTTTATAGCACCTTTCACCTATTGTCTCTTGCAAAATATTGCAACTGCTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061828 True 566 lncRNA 0.39 2 61579446 61581273

Neighbor

gene id symbol gene type direction distance location
XLOC_030551 orai2 coding upstream 7999 61556172 ~ 61571447 (+)
XLOC_030550 bckdk coding upstream 25436 61508418 ~ 61554010 (+)
XLOC_030549 lrwd1 coding upstream 74572 61475346 ~ 61504874 (+)
XLOC_030548 alkbh4 coding upstream 106680 61467618 ~ 61472766 (+)
XLOC_030547 polr2j coding upstream 114418 61459422 ~ 61465028 (+)
XLOC_030554 NA coding downstream 7335 61588608 ~ 61601237 (+)
XLOC_030555 NA coding downstream 20533 61601806 ~ 61631573 (+)
XLOC_030556 ap2b1 coding downstream 75737 61657010 ~ 61724082 (+)
XLOC_030557 RASL10B coding downstream 157003 61738276 ~ 61755045 (+)
XLOC_030558 hnrnpul1l coding downstream 218356 61799629 ~ 61820009 (+)
XLOC_030545 NA non-coding upstream 224917 61349733 ~ 61354529 (+)
XLOC_030544 CR932980.2 non-coding upstream 319379 61259952 ~ 61260067 (+)
XLOC_030539 NA non-coding upstream 801923 60763937 ~ 60777523 (+)
XLOC_030540 CABZ01101667.1 non-coding upstream 803448 60775881 ~ 60775998 (+)
XLOC_030538 NA non-coding upstream 865706 60702425 ~ 60713740 (+)
XLOC_030567 BX511157.1 non-coding downstream 504544 62085817 ~ 62085934 (+)
XLOC_030572 CR394528.1 non-coding downstream 1061651 62642924 ~ 62712620 (+)
XLOC_030573 NA non-coding downstream 1061933 62643206 ~ 62710728 (+)

Expression


Co-expression Network