XLOC_030548 (alkbh4)


Basic Information

Item Value
gene id XLOC_030548
gene name alkbh4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 61467618 ~ 61472766 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059643
TGTGGGAGCGCATTAAAGCGACGCACAATTGTAAGGCCATCGCTCTGATGATGAATCCAAGTTGTGGTTGTAAAGGAATAAGAACGTGTTTAAGATGTGAGACGGATGAAACTAAACATTTACTCCAGAAGAATGATCTGATTCATTATGATTTCATCTATGATCCAGTGTTGAAGTCAGCGGTCCGGGAAGAGGAGGGCAGCACTCCTCAGTGCTTCGAGTTTCCTGGAGTTTTGTTGTGGGAGAATTTTGTGTCTGAAGATGAAGAAAGGGAACTGGTTAGCAGAATGGATCAGGACGTCTGGAGAGAGTCTCAGTCAGGCAGACGAAAACAGGACTTTGGGCCAAAGGTGAACTTCAAGAAGCGCCGTGTCCATGTGGGAAGCTTCAGCGGCCTGCCTGCTATCAGTCGTCGGCTGCTGGTCCGGATGTCAGATTTACCCCAGTTATCTTCGTTCAAACCAGTGGAGCAGTGCAACCTGGACTATGATTCTCTCAGAGGCTCCGCCATCGACCCACACTTAGACGACAGCTGGCTGTGGGGAGAAAACCTGGTCACCGTTAACCTGCTCTCGGACACCGTTCTGACCTTGAGCTTGGATCAGGGCTGGGGAGACATGGAGCAGGGCGAGGTGAGGGTGGCTGTGCGTCTTCCCCGCAGGTCTCTGGTTGTGCTCTACGGAGATGCACGGCACCGGTGGAAACATGCCATCCACAGAAAAGACATTCACGGCCGCAGAGTGTGCAGCACCTTTCGGGAGCTCTCGGCTGAGTTTCTCCCCGGAGGACAGCAGGAGAAACTGGGCTCAGAGTTGTTGGATATAGCGCTGAGCTTCCAGGGTGCTCCTCTATAAGACAGCTCCACTTagatgcatgtttgtttgtttgttcaattgcacaaatgtaaagtgattgttttaattgttaatttaaataaatgctttttatcAGTCTGTT
>TCONS_00059644
GCGCATTAAAGCGACGCACAATTGTAAGGCCATCGCTCTGATGATGAATCCAAGTTGTGGTTGTAAAGGAATAAGAACGTGTTTAAGATGTGAGACGGATGAAACTAAACATTTACTCCAGAAGAATGATCTGTGTTGAAGTCAGCGGTCCGGGAAGAGGAGGGCAGCACTCCTCAGTGCTTCGAGTTTCCTGGAGTTTTGTTGTGGGAGAATTTTGTGTCTGAAGATGAAGAAAGGGAACTGGTTAGCAGAATGGATCAGGACGTCTGGAGAGAGTCTCAGTCAGGCAGACGAAAACAGGACTTTGGGCCAAAGGTGAACTTCAAGAAGCGCCGTGTCCATGTGGGAAGCTTCAGCGGCCTGCCTGCTATCAGTCGTCGGCTGCTGGTCCGGATGTCAGATTTACCCCAGTTATCTTCGTTCAAACCAGTGGAGCAGTGCAACCTGGACTATGATTCTCTCAGAGGCTCCGCCATCGACCCACACTTAGACGACAGCTGGCTGTGGGGAGAAAACCTGGTCACCGTTAACCTGCTCTCGGACACCGTTCTGACCTTGAGCTTGGATCAGGGCTGGGGAGACATGGAGCAGGGCGAGGTGAGGGTGGCTGTGCGTCTTCCCCGCAGGTCTCTGGTTGTGCTCTACGGAGATGCACGGCACCGGTGGAAACATGCCATCCACAGAAAAGACATTCACGGCCGCAGAGTGTGCAGCACCTTTCGGGAGCTCTCGGCTGAGTTTCTCCCCGGAGGACAGCAGGAGAAACTGGGCTCAGAGTTGTTGGATATAGCGCTGAGCTTCCAGGGTGCTCCTCTATAAGACAGCTCCACTTagatgcatgtttgtttgtttgttcaattgcacaaatgtaaagtgattgttttaattgttaatttaaataaatgctttttatcAGTCTGTT

Function

symbol description
alkbh4 Predicted to enable actin binding activity; demethylase activity; and oxidoreductase activity. Acts upstream of or within regulation of actomyosin structure organization. Predicted to be active in contractile ring and midbody. Is expressed in blastomere; forebrain; midbrain; oocyte; and otic vesicle. Orthologous to human ALKBH4 (alkB homolog 4, lysine demethylase).

GO:

id name namespace
GO:0031032 actomyosin structure organization biological_process
GO:0006482 protein demethylation biological_process
GO:0070988 demethylation biological_process
GO:0070989 oxidative demethylation biological_process
GO:0030496 midbody cellular_component
GO:0070938 contractile ring cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0032451 demethylase activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-275 Predicted to enable actin binding activity; demethylase activity; and oxidoreductase activity. Acts upstream of or within regulation of actomyosin structure organization. Predicted to be active in contractile ring and midbody. Is expressed in blastomere; forebrain; midbrain; oocyte; and otic vesicle. Orthologous to human ALKBH4 (alkB homolog 4, lysine demethylase).

Ensembl:

ensembl_id ENSDARG00000052247

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059643 False 957 mRNA 0.50 3 61467618 61472766
TCONS_00059644 True 922 mRNA 0.50 3 61467625 61472766

Neighbor

gene id symbol gene type direction distance location
XLOC_030547 polr2j coding upstream 2590 61459422 ~ 61465028 (+)
XLOC_030546 castor2 coding upstream 63805 61361815 ~ 61403813 (+)
XLOC_030545 NA coding upstream 113089 61349733 ~ 61354529 (+)
XLOC_030543 doc2b coding upstream 137962 60919378 ~ 61329656 (+)
XLOC_030544 CR932980.2 coding upstream 207551 61259952 ~ 61260067 (+)
XLOC_030549 lrwd1 coding downstream 2580 61475346 ~ 61504874 (+)
XLOC_030550 bckdk coding downstream 35652 61508418 ~ 61554010 (+)
XLOC_030551 orai2 coding downstream 83406 61556172 ~ 61571447 (+)
XLOC_030552 NA coding downstream 106680 61579446 ~ 61581273 (+)
XLOC_030553 NA coding downstream 107187 61579953 ~ 61580768 (+)
XLOC_030539 NA non-coding upstream 690095 60763937 ~ 60777523 (+)
XLOC_030540 CABZ01101667.1 non-coding upstream 691620 60775881 ~ 60775998 (+)
XLOC_030538 NA non-coding upstream 753878 60702425 ~ 60713740 (+)
XLOC_030554 NA non-coding downstream 115842 61588608 ~ 61601237 (+)
XLOC_030555 NA non-coding downstream 129040 61601806 ~ 61631573 (+)
XLOC_030567 BX511157.1 non-coding downstream 613051 62085817 ~ 62085934 (+)

Expression


Co-expression Network