XLOC_030549 (lrwd1)


Basic Information

Item Value
gene id XLOC_030549
gene name lrwd1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 61475346 ~ 61504874 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059645
GGGAAAACGATCTGACGTTAAATCTACCACATGTCTGCGAGTGTTGTGTTGTATATCTAAAGAATACATTTGGTCTGCATCTATTTGTTACAGTCTGTGGTCTGCATGCATATTACGGCCATGGAGAAGATTACCGAGAAGATACTGCTGGAGAAAAGCTCTACAAAGACGAACAAACTGGACCAGATCAAGACCCTCAATCTGTCCCGCATGAGTCTGAAGAGCGAGGATCTGCCTGTGCCTCTGCTGTCTAAACTGTGTCGTCTGGAGAAGTTGGATTTGTCTGGGAATATGTTGCAGAAGATCCCCAAAGGCCTCCGTCTGCCCTGCCTGAAGATCCTGAACTGCTCAAACAATGATATGGAGGATGTGTTGTCGCTGGAAGCCCTGACAAACTTAGAGGAACTTAGACTAGAGGACAACCTTTACCTCACAGTCAATGATGAACACAAAGTGATCTTCCTGTTACCTAATCTGAGGATGTTCAATGGGAAGGATATCAGTTCAACAGCTCATCATATTCGCCATGGGAGCACTGAGATCCTCAGGAAGCGGGTGATTGGTGTGTGGGAACGAGACTTTAGTCTTCCTGATCCCATTTCAGCAAAAAGCCTTGCTGCTGTTGAGAAGAGCTTTGTTAACGCTGCCTGCACACAAGTCAAGTA
>TCONS_00059646
ATGCATATTACGGCCATGGAGAAGATTACCGAGAAGATACTGCTGGAGAAAAGCTCTACAAAGACGAACAAACTGGACCAGATCAAGACCCTCAATCTGTCCCGCATGAGTCTGAAGAGCGAGGATCTGCCTGTGCCTCTGCTGTCTAAACTGTGTCGTCTGGAGAAGTTGGATTTGTCTGGGAATATGTTGCAGAAGATCCCCAAAGGCCTCCGTCTGCCCTGCCTGAAGATCCTGAACTGCTCAAACAATGATATGGAGGATGTGTTGTCGCTGGAAGCCCTGACAAACTTAGAGGAACTTAGACTAGAGGACAACCTTTACCTCACAGTCAATGATGAACACAAAGTGATCTTCCTGTTACCTAATCTGAGGATGTTCAATGGGAAGGATATCAGTTCAACAGCTCATCATATTCGCCATGGGAGCACTGAGATCCTCAGGAAGCGGGTGATTGGTGTGTGGGAACGAGACTTTAGTCTTCCTGATCCCATTTCAGCAAAAAGCCTTGCTGCTGTTGAGAAGAGCTTTGTTAACGCTGCCTGCACACAAGTCAAGTATGGCCCCAATTCCTTGAGTGATTACACAAAGTGGAGGGTTGAAAAGATTGCAAAGGAGTATTTGAAGTCACTGACCAGTAGTGAGGAGGAAGAACGGGTTGCAGACACAACTCCAACAAAGGAGAATAAGACAAAGGCCTGTGATGTTGGTGGCAACAGTATCACAAGTCCTCAAAAACGAACCAGAAACAACACTGATGTGGTTGCAGAGGCCAGTCCACGAAAGTCAAGTCGCCTGGTGAGTGCAGCTCCGGTTGAGGCTAGTCCACGAAAATCAGCTCGCGTGTTGAACACTCCACAGAAAACTCAGCCTGTAGTGTCCAGCCCCAGAAAGCACGCCAGACTGACCAGTGCAGAGACTCCGGAGAGCAGTCCTAGAAAGTCAAGTCGCTTGGAAAATGTTACTCAGAAAGCTGCTAGCCAAACAGAAAGCCCAAGAAAGCCAGGAATGTCTACACCCACATCAAAACAGGCTAAATGTGAGAGCCCAAGAAAACAGAGCAAACAGAGCACCGCCAAAATGGAGAAAAGCACACCTCGGAAAACTACCAAAGCCAAACTTCAAGTTCCTCAGGAGCCGGTGAGTCTGACACCTCTTCATGTCCTGCAGTGTCACAGTCGACAGAACGATCCAGACGACTTCAGCACTCAGCTTTGGGCCTGTGCTTTTGAGCCCCAGCAGGACGACAGTATCGATATCAGTGGTGGCTCTCAGACAATTGCCACATGTGGAGGAGAAACTTTGTGTGTGATCAACTGTGAGTCAGGACTGGTGCTGAAGAAATACAAGGTTCCTGGTGAGGATTTTTTCTCTTTAGCCTGGTCCACTGTGCTGATGTCCAGAACAGGTGGCTCTGCCCGTCCCTGCAATATCCTGGCTGCTGGAGGAAAGAGAGGTTGTGTGAAGCTCATCCATCCCCGAGTCAACCTGGCATTTGGAGAGTTTCGCGTCAGTCGACGTGCCATTTCCATAATGCGCTTCAATCCACGCAAACCcacctttctcttcaCTGGGACGTATGATAAAAAGATCTTTTTGTGGGACATTGGTGGACTGGATCAGGATTACAACTTTAAAATCAGTAAGCTGCTAACACTGGAGACGAGCTCCACTCCTCTTCATCTCGCTCTGCTCCCCTCGTCCCCAGACACACATCTGCTTTCAGGCTGTGATGAAGGCCTGTATTGCTTTGACGTCCAGCTCAGTAAAAACACACTGAAGAGaaATGAAGAGATTGAGATCGTATTTCCAATTTACAAGAAAAATGACAAGAAAAACAACTACCGGACTATTGATGGATTGAGCTTCCTTTCTGATGATGTAGTGGcATCCAAGAGCCACATGCAGGGCTCAATCTACCTGTGGAGCTGGAGTGCCACACGGGCATCATGGAACAGCAGAAAGAAAGAGGTGCCGGCTGTTATTCTGGCAGAGCTGCAATGGTCCAGTACTGACATCCCATACCTGTCTCTAGGCACCTGTCCAGgtTATGGTTATGTAGTATGTGGAGATGAGCAAGGCAGACTATGGATGTATCATATTACAGACACCATGATGGAAAACTTCAAGAGTGGAAAAACAATCTCAGCCACTGAGGTGCTGCAGTGGCCGTCACCTATCAGAGCTGGAAAGGGTGCTTTAGAGGGGCCGTCTATTAACAGCACCGCCATGGATCCTGGTCTCCATTATTTGGTGGCCCTTACAGACAAGAACATGGTTGTGGTTTGGAAAAGAGAGAGTCACTGA
>TCONS_00059647
ATTTTCACCGAATGCAGCCATGGAGAAGATTACCGAGAAGATACTGCTGGAGAAAAGCTCTACAAAGACGAACAAACTGGACCAGATCAAGACCCTCAATCTGTCCCGCATGAGTCTGAAGAGCGAGGATCTGCCTGTGCCTCTGCTGTCTAAACTGTGTCGTCTGGAGAAGTTGGATTTGTCTGGGAATATGTTGCAGAAGATCCCCAAAGGCCTCCGTCTGCCCTGCCTGAAGATCCTGAACTGCTCAAACAATGATATGGAGGATGTGTTGTCGCTGGAAGCCCTGACAAACTTAGAGGAACTTAGACTAGAGGACAACCTTTACCTCACAGTCAATGATGAACACAAAGTGATCTTCCTGTTACCTAATCTGAGGATGTTCAATGGGAAGGATATCAGTTCAACAGCTCATCATATTCGCCATGGGAGCACTGAGATCCTCAGGAAGCGGGTGATTGGTGTGTGGGAACGAGACTTTAGTCTTCCTGATCCCATTTCAGCAAAAAGCCTTGCTGCTGTTGAGAAGAGCTTTGTTAACGCTGCCTGCACACAAGTCAAGTATGGCCCCAATTCCTTGAGTGATTACACAAAGTGGAGGGTTGAAAAGATTGCAAAGGAGTATTTGAAGTCACTGACCAGTAGTGAGGAGGAAGAACGGGTTGCAGACACAACTCCAACAAAGGAGAATAAGACAAAGGCCTGTGATGTTGGTGGCAACAGTATCACAAGTCCTCAAAAACGAACCAGAAACAACACTGATGTGGTTGCAGAGGCCAGTCCACGAAAGTCAAGTCGCCTGGTGAGTGCAGCTCCGGTTGAGGCTAGTCCACGAAAATCAGCTCGCGTGTTGAACACTCCACAGAAAACTCAGCCTGTAGTGTCCAGCCCCAGAAAGCACGCCAGACTGACCAGTGCAGAGACTCCGGAGAGCAGTCCTAGAAAGTCAAGTCGCTTGGAAAATGTTACTCAGAAAGCTGCTAGCCAAACAGAAAGCCCAAGAAAGCCAGGAATGTCTACACCCACATCAAAACAGGCTAAATGTGAGAGCCCAAGAAAACAGAGCAAACAGAGCACCGCCAAAATGGAGAAAAGCACACCTCGGAAAACTACCAAAGCCAAACTTCAAGTTCCTCAGGAGCCGGTGAGTCTGACACCTCTTCATGTCCTGCAGTGTCACAGTCGACAGAACGATCCAGACGACTTCAGCACTCAGCTTTGGGCCTGTGCTTTTGAGCCCCAGCAGGACGACAGTATCGATATCAGTGGTGGCTCTCAGACAATTGCCACATGTGGAGGAGAAACTTTGTGTGTGATCAACTGTGAGTCAGGACTGGTGCTGAAGAAATACAAGGTTCCTGGTGAGGATTTTTTCTCTTTAGCCTGGTCCACTGTGCTGATGTCCAGAACAGGTGGCTCTGCCCGTCCCTGCAATATCCTGGCTGCTGGAGGAAAGAGAGGTTGTGTGAAGCTCATCCATCCCCGAGTCAACCTGGCATTTGGAGAGTTTCGCGTCAGTCGACGTGCCATTTCCATAATGCGCTTCAATCCACGCAAACCcacctttctcttcaCTGGGACGTATGATAAAAAGATCTTTTTGTGGGACATTGGTGGACTGGATCAGGATTACAACTTTAAAATCAGTAAGCTGCTAACACTGGAGACGAGCTCCACTCCTCTTCATCTCGCTCTGCTCCCCTCGTCCCCAGACACACATCTGCTTTCAGGCTGTGATGAAGGCCTGTATTGCTTTGACGTCCAGCTCAGTAAAAACACACTGAAGAGaaATGAAGAGATTGAGATCGTATTTCCAATTTACAAGAAAAATGACAAGAAAAACAACTACCGGACTATTGATGGATTGAGCTTCCTTTCTGATGATGTAGTGGcATCCAAGAGCCACATGCAGGGCTCAATCTACCTGTGGAGCTGGAGTGCCACACGGGCATCATGGAACAGCAGAAAGAAAGAGGTGCCGGCTGTTATTCTGGCAGAGCTGCAATGGTCCAGTACTGACATCCCATACCTGTCTCTAGGCACCTGTCCAGgtTATGGTTATGTAGTATGTGGAGATGAGCAAGGCAGACTATGGATGTATCATATTACAGACACCATGATGGAAAACTTCAAGAGTGGAAAAACAATCTCAGCCACTGAGGTGCTGCAGTGGCCGTCACCTATCAGAGCTGGAAAGGGTGCTTTAGAGGGGCCGTCTATTAACAGCACCGCCATGGATCCTGGTCTCCATTATTTGGTGGCCCTTACAGACAAGAACATGGTTGTGGTTTGGAAAAGAGAGAGTCACTGAGTTTTTTGCGGTTTGTTTTTGCAACTCGACTTGAATTGTAATCATGGTTTTGTGAGGAGAACATGACTTGAAAGGGAAATCGCAGACTTCAACTGTTACAAAGACTTATTGTCTTAAAGAGACAGAGAAAGACTAATTTGAGCCATCATGTGGATTTATTCCTGTTGCACTGTCACAAATGTAATTTAGCAAAATCACTCGGAATTTCTTTACTtcaagtgtttttattgtttgttttagtattttttttaattcaaattcagaaaaaaaaagattgtcgGTTAAAAATGACATTGTTCAAAACTGTTTTTTCCTAATAAACTGGTGTCATACatcatatttcttttta

Function

symbol description
lrwd1 Predicted to enable chromatin binding activity; methyl-CpG binding activity; and methylated histone binding activity. Predicted to be involved in chromatin organization and establishment of protein localization to chromatin. Predicted to act upstream of or within DNA replication. Predicted to be located in chromosomal region and nucleus. Predicted to be part of nuclear origin of replication recognition complex. Is expressed in blastomere. Orthologous to human LRWD1 (leucine rich repeats and WD repeat domain containing 1).

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0071169 establishment of protein localization to chromatin biological_process
GO:0006260 DNA replication biological_process
GO:0000775 chromosome, centromeric region cellular_component
GO:0000776 kinetochore cellular_component
GO:0000777 condensed chromosome kinetochore cellular_component
GO:0000781 chromosome, telomeric region cellular_component
GO:0005815 microtubule organizing center cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005634 nucleus cellular_component
GO:0005664 nuclear origin of replication recognition complex cellular_component
GO:0005694 chromosome cellular_component
GO:0005721 pericentric heterochromatin cellular_component
GO:0005737 cytoplasm cellular_component
GO:0035064 methylated histone binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0008327 methyl-CpG binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-030131-5335 Predicted to enable chromatin binding activity; methyl-CpG binding activity; and methylated histone binding activity. Predicted to be involved in chromatin organization and establishment of protein localization to chromatin. Predicted to act upstream of or within DNA replication. Predicted to be located in chromosomal region and nucleus. Predicted to be part of nuclear origin of replication recognition complex. Is expressed in blastomere. Orthologous to human LRWD1 (leucine rich repeats and WD repeat domain containing 1).

Ensembl:

ensembl_id ENSDARG00000035147

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059645 False 665 processed_transcript 0.46 5 61475346 61487595
TCONS_00059646 False 2307 mRNA 0.48 16 61475451 61504525
TCONS_00059647 True 2660 mRNA 0.46 15 61476014 61504874

Neighbor

gene id symbol gene type direction distance location
XLOC_030548 alkbh4 coding upstream 2580 61467618 ~ 61472766 (+)
XLOC_030547 polr2j coding upstream 10318 61459422 ~ 61465028 (+)
XLOC_030546 castor2 coding upstream 71533 61361815 ~ 61403813 (+)
XLOC_030545 NA coding upstream 120817 61349733 ~ 61354529 (+)
XLOC_030543 doc2b coding upstream 145690 60919378 ~ 61329656 (+)
XLOC_030550 bckdk coding downstream 3544 61508418 ~ 61554010 (+)
XLOC_030551 orai2 coding downstream 51298 61556172 ~ 61571447 (+)
XLOC_030552 NA coding downstream 74572 61579446 ~ 61581273 (+)
XLOC_030553 NA coding downstream 75079 61579953 ~ 61580768 (+)
XLOC_030554 NA coding downstream 83734 61588608 ~ 61601237 (+)
XLOC_030544 CR932980.2 non-coding upstream 215279 61259952 ~ 61260067 (+)
XLOC_030539 NA non-coding upstream 697823 60763937 ~ 60777523 (+)
XLOC_030540 CABZ01101667.1 non-coding upstream 699348 60775881 ~ 60775998 (+)
XLOC_030538 NA non-coding upstream 761606 60702425 ~ 60713740 (+)
XLOC_030555 NA non-coding downstream 96932 61601806 ~ 61631573 (+)
XLOC_030567 BX511157.1 non-coding downstream 580943 62085817 ~ 62085934 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000059_04542374_04554071 NA coding CI01000059 null 4542374 ~ 4554926 (+)