CI01000059_04542374_04554071


Basic Information

Item Value
gene id CI01000059_04542374_04554071
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 4542374 ~ 4554926 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000059_04542374_04554071.mRNA
ATGGCGAAGATAACAGAGAAGATACTGCTGGAGAAAAGCTCTCCAAAGACAAACAAACTGGACCAGATCAAGACCCTCAATCTGTCACGTATGGGTCTGAAGAGCGAGGATCTGCCTGTGCCTCTGCTGTCTAAACTGTGTAGTCTAGAGCAGTTGGATTTGTCTGGGAACATGTTGCAGGAGATTCCCAAAGGCCTCTGTCTGCCCTGCCTGAAGATCCTGAACTGCTCAAACAACGATATGGAGGATGTGACGTCACTGGAAGCCCTGAGAAACATCGAAGAGCTTAGACTAGAGGACAACCTCTACCTCACAGTCAATGATGAACACAAAGTGATCTTCCTATTGCCTAAACTGAGGATGTTCAACGGGAAGGATATCAGCTCTACGGCCCATCATATTCGCCATGGCAGCACTGAGATCCTCAGGAAGAGAGTGATTGGTTTGTGGGAACGAAGCTTCAGTCTCCCTGATCCCATCACGACACAAAGTCTGGCTGCTGTGGAGAAGAGTTTTGTTAATGCTGCGCTCAGCCAAATCAAATACGGCCCCAGTTCCTTGAGTGATTACACAAAGTGGAGGGTTGAAATGATTGCAAAGGAATATTTGAAGTCACTGACGTGCAGTGAAGAAGAAAGCACAGACATAACTCCAACAAAGGAGAATGAGTCTCCTGCAGAGAGAAAGGCTTGTGATCTTGGAGGTAACAGTATCACAAGTCCTCAGAAAAGAACCCGAAACAACACTGAAGTGTCTGCAGAGGCCAGTCCACGAAAGTCAAGTCGCTTGGCGAGTACAGCTCCGGCTGAGGCTAGTCCACGAAAATCCACTCGAGTGCCGAGCACTCCACAGAAAACTGACCCTATATTGTCCAGCCCCAGAAAGCATGCCAGAATGACCAATGTGGACACTCCAGAGGGAAGTCCAAGGAAATCAAGCCGCCTGGAAAATATTTCTCAGAAAGTTGTTACCAAAACTGAAAGCCCCAGAAAAGCATCTAAGAGCTCCGGCATCTCTACGCCCACATCAAGGCCAGCGAAATGTGAGAGCCCAAGGAAAACGGCTAAAGATCAGACTACAGCTCAACAAAGCAAACAGACCACTGCTGACACACCTCGGAAAACTACCAGAATCAAACTCCAAGTTCCTCAGGAGCCGGTGAGTCTGCAGCCGTTCCATGTCCTGCAGTGTCACAGTCGACAGGACAGTCCTGACGACTTCAGCACTCAGCTTTGGGCCTGTGCCTTTGAGCCCCCGCAGGAATGCAGTAGTGGTGATGTCAGAGATGGCTCTCGGACAGTTGCCACATGTGGAGGGGAAACTTTGTGTGTGATTGACTGTGAGTCAGGACATGTGCTGAAGAAATACAAGGTTCCTGGTGAGGAGTTCTTCTCACTAGCATGGTCCACGGTGCTGATGTCCAGGACAGGTGGCTCTACCCGACCCTGCAATATCCTGGCTGCTGGGGGAAAGAGGGGTCTTGTAAAGCTCATCCATCCCCGAGTCAACCTGGCATTCGGAGAGTTTCGCGTCAGTCGACGTGCCATTTCCATTATGCGCTTCAGTCCACGCAACGTTAGCTTTCTCTTCACTGGAACGTATGAAAATAAGATCTTTTTGTGGGACATTGGTGGATTGGATCGTGATTACAACTTTAAAATCAGAAATGAGGAGATGGAGATTGTGTTTCCAGTTTACAAGAAAAAAGACAAGAAAAACACATACCGGACTATTGACGGACTGAGCTTCCTCTCAGATGATATAGTGGCATCCAAGAGCCACATGCAGGGCTCTATCTACTTGTGGAGCTGGAGTGCTACTCGGGCATCTTGGAATGGCAGAAAGAAAGAGGTGGCAGCTGTTGTTCTGGCAGAGCTGCAGTGGTCCAGCACTGATGTCCCATACCTGTCTCTAGGCACCTGTCCAGGTTATGGTTATGTGGTGTGTGGGGATGAGCAAGGCAGACTATGGATGTACCATATCACAGACACCATGATGGAAAACTTCAAGAGTGGAAAAACGATCTCAGCCACTGAGGTGCTGGAGTGGCCGGCACCGGTTAGAGCTGGAAAGGGTGCATTAGAGGGGCCTTCTATTAACAGCATTGCCATGGATCCTGATCTACAGTACTTGGTTGCTCTTACTGACAAGAACATGGCCGTGGTATGGAAGAGAGAGAATCACTGAGCACACAGAGATGTTCAGCTGCTGGCAGTATTTCTCCTTATTGCATTGCATTTCTGAACTGGACTTGAATTGAGATCATGATTGTGTGAGGAAAGCCGGAGTTAAAAAGAAAATGAAGACTTCACCTGTTTTTAAGACTTATTGTCTCAAAGAGACAGAGAAATACTAATTTAGCCATCATGCAAATTTGTCCCTGTTCCACTTTTAAGAGTTTTAGTAGGTGAAAGGCAATTGTTATTACATACTTCACGATTTCAAAAAATGTTAGTGTATTTTTTCTTTTCCTTTTTATGTTGTTTAAAAATTATCTATATATTAAAAGGGACCTATTATGCCCCTTTTTTTGATTGTGTTTTTGGGGTCTACTAGAATTGGTTTTCTTGATTGAATGTTCAAAGAAAAACTTTTTTTTTTTTTTTTTTGGCACCAATGGGCTCTACGATCAGCTTAGCTGCTGATGCTTTTGAGAAGCACAGCCCTGTTTAGTTCCTGTCTCTATGAAGCCCCTCCTTCTGAAAAGCACAGTGTGCTCTGATTGGTCGACTGGACCAGTGTGTTGAGATTGGTCAACCGCTTTGAGTGTGTTTCGGAAATGTCACGCCCCTTACCATAACCACGAGTTTTGGCACATTACTAACACAACTTTTTTTCGTTTGCCTTGGGCGGGAATTATTTAAGAGGAATATTGTGATGTTGACATTCCCAGAAAAAAACTCAGGAGGTTCAGAAACAGATATAGAGAATAACTCCCTTTGGAGTGGACTTGGTTCTTTGTCCCTTTAATTTCAGAGAAAAGATTGTCTGAAAAGAATGACATTGTTCAAAACAGGACTTGTTATATTTTTGTTTTAACGA

Function

NR:

description
Lrwd1 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000059_04542374_04554071.mRNA True 3042 mRNA 0.46 14 4542374 4554926

Neighbor

gene id symbol gene type direction distance location
CI01000059_04537580_04540637 ALKBH4 coding upstream 1556 4537580 ~ 4540818 (+)
CI01000059_04533856_04536270 RPO2J, POLR2J, POLR2J.S, POLR2J2, POLR2J3 coding upstream 5986 4533529 ~ 4536388 (+)
CI01000059_04479563_04499562 GATSL2, GATSL2.L coding upstream 41946 4479083 ~ 4500428 (+)
CI01000059_04472236_04475254 NA coding upstream 66641 4471743 ~ 4475733 (+)
CI01000059_04427836_04462926 DOC2A, DOC2B coding upstream 79419 4427836 ~ 4462955 (+)
CI01000059_04558576_04590484 BCKDK coding downstream 3650 4558576 ~ 4590721 (+)
CI01000059_04597371_04601178 ORAI2, ORAI1.S, ORAI1 coding downstream 42401 4597327 ~ 4601347 (+)
CI01000059_04633952_04678096 AP2B1.L, AP2B1 coding downstream 79026 4633952 ~ 4678271 (+)
CI01000059_04696095_04711041 RASL10B coding downstream 141169 4696095 ~ 4711632 (+)
CI01000059_04738121_04755527 HNRNPUL1 coding downstream 182971 4737897 ~ 4756037 (+)
G253509 NA non-coding upstream 13082 4529083 ~ 4529292 (+)
G253506 NA non-coding upstream 26538 4480684 ~ 4515836 (+)
G253504 NA non-coding upstream 71859 4470270 ~ 4470515 (+)
G253380 NA non-coding upstream 129661 4395203 ~ 4412713 (+)
G253377 NA non-coding downstream 46852 4601778 ~ 4602016 (+)
G253369 NA non-coding downstream 47203 4602129 ~ 4603851 (+)
G253383 NA non-coding downstream 51854 4606780 ~ 4607960 (+)
G253548 NA non-coding downstream 126749 4681675 ~ 4682157 (+)
G253554 NA non-coding downstream 139767 4694693 ~ 4694908 (+)
G252732 NA other upstream 1339283 3202739 ~ 3203091 (+)
CI01000059_02133197_02134625 NA other upstream 2407196 2133003 ~ 2135347 (+)
CI01000059_02068570_02070710 NA other upstream 2470450 2068544 ~ 2071924 (+)
G251249 NA other upstream 2880984 1627766 ~ 1661390 (+)
G251017 NA other upstream 3475017 1056252 ~ 1067357 (+)
G253654 NA other downstream 682833 5237759 ~ 5238233 (+)
G254692 NA other downstream 1705117 6260043 ~ 6261633 (+)
G255434 NA other downstream 2890016 7444942 ~ 7450195 (+)
G256046 NA other downstream 3799293 8354219 ~ 8354873 (+)
CI01000059_08640558_08653639 NA other downstream 4077025 8640451 ~ 8654233 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030549 lrwd1 coding NC_007116.7 CM002889.2 61475346 ~ 61504874 (+)