CI01000059_04633952_04678096 (AP2B1.L, AP2B1)


Basic Information

Item Value
gene id CI01000059_04633952_04678096
gene name AP2B1.L, AP2B1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 4633952 ~ 4678271 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000059_04633952_04678096.mRNA
GTGAAATCTTTGAGCTGAAGGCTGAGCTGAACAATGAGAAGAAGGAGAAGAGGAAAGAGGCAGTGAAGAAAGTCATTGCAGCCATGACAGTGGGCAAGGATGTCAGTTCCTTGTTTCCAGATGTGGTAAACTGCATGCAGACCGATAACCTGGAGCTGAAGAAACTGGTTTACCTGTACCTTATGAACTATGCCAAAAGTCAACCTGACATGGCCATCATGGCCGTTAACAGCTTTGTGAAGGACTGTGAGGATCCGAACCCACTGATCCGAGCTCTGGCTGTGCGTACAATGGGATGTATTCGTGTGGATAAGATCACTGAGTACTTGTGCGAGCCTCTGCGAAAGTGTCTGAAGGATGAAGACCCCTATGTGAGGAAGACCGCAGCAGTATGTGTGGCCAAACTTCATGACATCAACGCCCAGATGGTGGAGGACCAGGGCTTCCTGGATTCTCTCAGGGACCTGATCGCTGACTCCAACCCCATGGTTGTGGCTAATGCAGTTGCTGCTCTGTCTGAGATCAGCGAGTCTCACCCCAACAGCAACCTTCTGGACCTGAATCCCCAGAACATCAATAAGCTCCTGACGGCGCTCAACGAGTGCACTGAGTGGGGCCAGATCTTCATCCTGGACTGCCTCTCCAACTACAACCCCAAAGACGAGCGTGAGGCCCAGAGTATCTGTGAGCGTGTGACTCCACGTCTCTCTCATGCTAACTCGGCTGTGGTGCTGTCAGCGGTGAAGGTACTGATGAAGTTCCTGGAGCTCCTGCCCAAAGACTCTGATTACTACAACACTCTTCTGAAGAAGCTCTCTCCTCCTCTCGTCACACTGTTGTCTGGGGAACCAGAGGTCCAATATGTGGCCCTCAGGAACATTAACCTTATTGTGCAGAAACGGCCTGAGATCTTGAAGCAGGAGATCAAAGTCTTCTTTGTCAAGTACAATGACCCTATCTACGTCAAGCTGGAGAAACTGGACATCATGATCCGTCTGGCCTCTCATGCCAACATTGCCCAGGTACTAGCTGAACTGAAGGAGTATGCCACTGAGGTGGATGTAGACTTTGTTCGGAAAGCTGTTCGAGCCATCGGCCGTTGTGCCATCAAAGTGGAGCAATCAGCTGAGCGTTGTGTTAGCACCCTGCTGGACCTCATCCAGACCAAAGTCAATTATGTTGTGCAAGAGGCCATTGTGGTCATCAGGGATATCTTCCGCAAATACCCCAACAAATATGAAAGCATAATTGCCACTCTGTGTGAAAACCTGGACTCTCTGGATGAGCCTGACGCTCGAGCAGCCATGATCTGGATTGTGGGTGAATATGCAGAGCGTATCGACAATGCTGATGAGCTCCTGGAGAGTTTCCTTGAGGGCTTCCATGATGAAAGCACTCAGGTCCAGTTGACTCTGCTGACGGCCATAGTGAAGCTGTTCCTGAAGAAGCCCTCAGAGACTCAAGAGCTGGTTCAGCAAGTGCTCAGTCTGGCCACTCAGGACTCTGATAACCCTGACTTGCGTGATCGTGGCTACATCTACTGGCGTCTGCTGTCCACCGACCCTGTGACAGCTAAAGAGGTTGTGCTGTCTGAGAAGCCTCTGATCTCAGAGGAGACGGACCTGATTGAGCCCACCCTGTTGGACGAGCTCATCTGCCACATCGGCTCGCTGGCCTCCGTCTACCACAAACCCCCCAATGCCTTTGTGGAAGGAAGCCACGGCATTCACCGCAAACATCTGCCCATCCAGCACGGCAGTATCGACACCGGGGAGAGTCCAGTCAGTGCTGGCCCGACTGCTTCCATCGATCAACCCCAAGTCATTCCATCTCAGGGTGACCTCCTAGGAGACCTGCTTAATCTGGACCTCGGTCCCCCCGTCAACGTGCCCCAGGTGTCTTCCATGCAGATGGGTGCTGTGGATCTCCTCGGAGGTGGTCTTGACAGTTTGGCTAGTGATATACTCATCATTGAGTTTCACTGCTCATTGACTCCTTCACTTGATGGCAAAACACAGGTTGTGAGACTTGAATTAAATCAGATAAATCAGTATTTGGAGCTCGGGGGAGATCTAGGAGGAGGTGTTGGGGGCAGTCCTGCAGTTGGCCAAAACTTCATCCCATCATCGGTGCCCAACACTTTTGCGCCGTCTCCTACACCTGCTGCTCTCAGCAGCGGGCTCAATGACCTGTTTGAGTTGTCCTCAGGAATGTCCATTGCTACAGGAGGATATGTGTCACCTAAAACTGTATGGCTACCAGCAGTCAAGGCCAAAGGACTGGAGATATCTGGAACCTTCTCTCGGCGTCAGGGGCACATGTACATGGACATGAGCTTCACCAATAAAGCCCTGCAGCACATGACTGACTTTGCCATCCAGTTCAACAAGAACAGTTTTGGAGTGATCCCCACCACACCTCTTCCCGTTCACACTCCACTGATGCCCAGCCAGAGCATCGACATCTCCCTCCCTCTCAACACCATCGGACCAGTGATGAAAATGGACCCACTCAACAACCTACAGGTGGCCGTGAAAAACAACATTGATGTCTTCTACTTCAGCACGCTGATCCCTCTCAACATCTTCTTTGTGGAGGACGGCAAAATGGAGCGTCAGGTGTTCTTGGCCACATGGAAGGACATTCCAAATGAGAATGAGCTGCAGTACCAGATCAAAGAATGCCACTTAAATGCAGATACGGTGTCAGGCAAACTGCAGAACAACAATGTCTACACCATCGCCAAGAGGAACGTAGAAGGCCAGGACATGCTGTATCAGTCGCTCAAACTCACCAACGGGATCTGGATACTCGCCGAACTCCGCATACAACCTGGCAATCCCAATTACACGGTAATCACTCACAGCACGAAGATGCAACAATTGTGTATTCAAACAAAGTCCAACTCGAAAAACGCTTGCCAATTTAACACAAAAGAGCAAAATAAATCTTGTCCCTTGACAAACAAAATGCTTTTGACATTGTCCAGAACATATTCAAGGACATCCTTCATCCCTAACTTTGCCAGAATACGATATTAACATAAAACCTGCTTTATTTTGATATCTACTTTTTTTTGTCCACCGATCCACTCCCAAGGTTTCAGCACATTATTATGAAATTGTAATTCAGTGCTCTGAAGATCAGGCTTTTAAAACATGATAAATTGATGACCCTGAAAGCCGTGCTTTCTGCTTGACTTGCTTGCCTAATGCA

Function

symbol description
ap2b1 Predicted to enable clathrin binding activity. Predicted to be involved in vesicle-mediated transport. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in membrane. Predicted to be part of clathrin adaptor complex. Orthologous to human AP2B1 (adaptor related protein complex 2 subunit beta 1).

GO:

id name namespace
GO:0003281 ventricular septum development biological_process

KEGG:

id description
K11825 AP2B1; AP-2 complex subunit beta-1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000059_04633952_04678096.mRNA True 3216 mRNA 0.50 20 4633952 4678271

Neighbor

gene id symbol gene type direction distance location
CI01000059_04597371_04601178 ORAI2, ORAI1.S, ORAI1 coding upstream 32605 4597327 ~ 4601347 (+)
CI01000059_04558576_04590484 BCKDK coding upstream 43231 4558576 ~ 4590721 (+)
CI01000059_04542374_04554071 NA coding upstream 79026 4542374 ~ 4554926 (+)
CI01000059_04537580_04540637 ALKBH4 coding upstream 93134 4537580 ~ 4540818 (+)
CI01000059_04533856_04536270 RPO2J, POLR2J, POLR2J.S, POLR2J2, POLR2J3 coding upstream 97564 4533529 ~ 4536388 (+)
CI01000059_04696095_04711041 RASL10B coding downstream 17824 4696095 ~ 4711632 (+)
CI01000059_04738121_04755527 HNRNPUL1 coding downstream 59626 4737897 ~ 4756037 (+)
CI01000059_04772561_04774001 NA coding downstream 94290 4772561 ~ 4774494 (+)
CI01000059_04775037_04778148 NA coding downstream 96766 4775037 ~ 4778226 (+)
CI01000059_04788367_04802962 SYMPK coding downstream 110096 4788367 ~ 4802962 (+)
G253383 NA non-coding upstream 25992 4606780 ~ 4607960 (+)
G253369 NA non-coding upstream 30101 4602129 ~ 4603851 (+)
G253377 NA non-coding upstream 31936 4601778 ~ 4602016 (+)
G253509 NA non-coding upstream 104660 4529083 ~ 4529292 (+)
G253506 NA non-coding upstream 118116 4480684 ~ 4515836 (+)
G253548 NA non-coding downstream 3404 4681675 ~ 4682157 (+)
G253554 NA non-coding downstream 16422 4694693 ~ 4694908 (+)
G253562 NA non-coding downstream 45763 4724034 ~ 4724386 (+)
G253564 NA non-coding downstream 50384 4728655 ~ 4728857 (+)
G253537 NA non-coding downstream 69062 4747333 ~ 4749557 (+)
G252732 NA other upstream 1430861 3202739 ~ 3203091 (+)
CI01000059_02133197_02134625 NA other upstream 2498774 2133003 ~ 2135347 (+)
CI01000059_02068570_02070710 NA other upstream 2562028 2068544 ~ 2071924 (+)
G251249 NA other upstream 2972562 1627766 ~ 1661390 (+)
G251017 NA other upstream 3566595 1056252 ~ 1067357 (+)
G253654 NA other downstream 559488 5237759 ~ 5238233 (+)
G254692 NA other downstream 1581772 6260043 ~ 6261633 (+)
G255434 NA other downstream 2766671 7444942 ~ 7450195 (+)
G256046 NA other downstream 3675948 8354219 ~ 8354873 (+)
CI01000059_08640558_08653639 NA other downstream 3953680 8640451 ~ 8654233 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00005468 ap2b1,LOC103360248 coding CM030142.1 CM030142.1 973630 ~ 984375 (+)