CI01000059_04558576_04590484 (BCKDK)


Basic Information

Item Value
gene id CI01000059_04558576_04590484
gene name BCKDK
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 4558576 ~ 4590721 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000059_04558576_04590484.mRNA
ATGGAGCTGTTGGGCAGCGGCGGCTCCAGAATGAGCGTAACCAGGCTCTTTTTATACGCATCAGCCAAAGCAGCCGCTCCGCAGTCGACCGGAGTAACGTTACATGGCATCGACAAAAGATTTAGATCCACATCGTCCATGTCCAGTTACTCTGAGCTGGCTCGGGAGCGGTCCAAAACCGTTACGTCTTTTTACAATCAGTCTGCCATCGACGCATCTGCCGAGAAGCCTTCAGTCAGACTGACACCAGCCACAATGCTGTATGCAGGGAAGTCTCCTGATGGACAACATGTCCTGAGCAGTGCCAGGTATCTGCACAAAGAGCTGCCTGTCCGCATCGCACATCGCATTAAGGGCTTCCGCAGCCTGCCCTTCATTATCGGCTGCAACCCAACCATTCTCCAAGTGCATGAGCTTTATATCAGGGCCTACCACATGCTGAGTGACTTCCCAGCTATTAAAGACCAGGAGACTGAGGCTCGCTATAGCAAACTTGTAAAACAGCTTCTTGATGATCACAAGGATGTTGTCACCATGTTAGCTGAAGGATTCAGGGAATGTCGTAAACACATTTTGGACGAGACTCTGGTTCGCAATTTCTTGGACACGACGTTGACGTCTCGTCTGGGCATCCGCATGCTGGCCACACACCACATTGCCCTGCATGAGGATAATCCTGACTTTGTTGGCATTATATGCCGCCGCCTGTCGCCTAAAAAGATCATCGAGAAGTGGGTTGACTTTGCTCGACGGCTCTGTGAGCATCAGTATGGGAATTCTCCACGGGTTCGCATCAACGGCCATGTGGCGGCCCGCTTTCCCTTCATTCCACTGCCTCTGGACTACATCCTGCCTGAGCTGCTGAAGAACGCCATGAGGGCCACCATGGAGAGTCACTTGGACACCCCTTACAATGTGCCTGATGTGGTGGTCACAATCGCCAACAATGACACTGACTTTGTCATAAGGATCTCAGACCGTGGTGGTGGCATTCCTCACAGCATTCTGGAAAAGGTGATGGATTACCACTTCAGCACAGCTGAACAGAGCACACAGGATCCCCGCATTAACAACCTTTTCGACAACATCACCAACAGCGGCCCCCAGTCCGGACCCATGCATGGGTTTGGCTTTGGCCTGCCCACATCCCGAGCGTACGCCGAATACTTAGGAGGTTCCTTGGCCATCCAGTCGATGCAGGGCATCGGCACAGACGTCTACCTGCGTCTTCGGCACATTGATGGCAAAGGAGAAAGCTTCAGAGTTTGATGTCGTGGTCTATTCATAGAGCTTGTGGTCAGTCACCACGTCGAAGATATTAAGGTTCGAAGTTGAACCAAAACCAGGATGTTCAGCAGTTAACCTTTCGCTCATATTACCTGTCCTCATACACCGCATCACATTTTGGATCATGTTTTCTGCATTTTATGGGATTATTCGCACTGCATTGTGTTTGTGTAGTTCACTGTGATTTATTAGCCTTAAGATTTCTAAGCGATTTCATGA

Function

symbol description
bckdk Predicted to enable pyruvate dehydrogenase (acetyl-transferring) kinase activity. Predicted to be involved in protein phosphorylation and regulation of glucose metabolic process. Predicted to act upstream of or within phosphorylation. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Is expressed in several structures, including midbrain neural keel; midbrain neural rod; neural plate; pancreatic system; and primary neurons. Human ortholog(s) of this gene implicated in branched-chain keto acid dehydrogenase kinase deficiency. Orthologous to human BCKDK (branched chain keto acid dehydrogenase kinase).

GO:

id name namespace
GO:0047323 [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase activity molecular_function

KEGG:

id description
K00905 BCKDK; [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000059_04558576_04590484.mRNA True 1506 mRNA 0.50 11 4558576 4590721

Neighbor

gene id symbol gene type direction distance location
CI01000059_04542374_04554071 NA coding upstream 3650 4542374 ~ 4554926 (+)
CI01000059_04537580_04540637 ALKBH4 coding upstream 17758 4537580 ~ 4540818 (+)
CI01000059_04533856_04536270 RPO2J, POLR2J, POLR2J.S, POLR2J2, POLR2J3 coding upstream 22188 4533529 ~ 4536388 (+)
CI01000059_04479563_04499562 GATSL2, GATSL2.L coding upstream 58148 4479083 ~ 4500428 (+)
CI01000059_04472236_04475254 NA coding upstream 82843 4471743 ~ 4475733 (+)
CI01000059_04597371_04601178 ORAI2, ORAI1.S, ORAI1 coding downstream 6606 4597327 ~ 4601347 (+)
CI01000059_04633952_04678096 AP2B1.L, AP2B1 coding downstream 43231 4633952 ~ 4678271 (+)
CI01000059_04696095_04711041 RASL10B coding downstream 105374 4696095 ~ 4711632 (+)
CI01000059_04738121_04755527 HNRNPUL1 coding downstream 147176 4737897 ~ 4756037 (+)
CI01000059_04772561_04774001 NA coding downstream 181840 4772561 ~ 4774494 (+)
G253509 NA non-coding upstream 29284 4529083 ~ 4529292 (+)
G253506 NA non-coding upstream 42740 4480684 ~ 4515836 (+)
G253504 NA non-coding upstream 88061 4470270 ~ 4470515 (+)
G253380 NA non-coding upstream 145863 4395203 ~ 4412713 (+)
G253377 NA non-coding downstream 11057 4601778 ~ 4602016 (+)
G253369 NA non-coding downstream 11408 4602129 ~ 4603851 (+)
G253383 NA non-coding downstream 16059 4606780 ~ 4607960 (+)
G253548 NA non-coding downstream 90954 4681675 ~ 4682157 (+)
G253554 NA non-coding downstream 103972 4694693 ~ 4694908 (+)
G252732 NA other upstream 1355485 3202739 ~ 3203091 (+)
CI01000059_02133197_02134625 NA other upstream 2423398 2133003 ~ 2135347 (+)
CI01000059_02068570_02070710 NA other upstream 2486652 2068544 ~ 2071924 (+)
G251249 NA other upstream 2897186 1627766 ~ 1661390 (+)
G251017 NA other upstream 3491219 1056252 ~ 1067357 (+)
G253654 NA other downstream 647038 5237759 ~ 5238233 (+)
G254692 NA other downstream 1669322 6260043 ~ 6261633 (+)
G255434 NA other downstream 2854221 7444942 ~ 7450195 (+)
G256046 NA other downstream 3763498 8354219 ~ 8354873 (+)
CI01000059_08640558_08653639 NA other downstream 4041230 8640451 ~ 8654233 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030550 bckdk coding NC_007116.7 CM002889.2 61508418 ~ 61554010 (+)
bowfin (Amia calva) AMCG00012165 NA coding CM030138.1 CM030138.1 12038225 ~ 12042088 (-)