CI01000059_04479563_04499562 (GATSL2, GATSL2.L)


Basic Information

Item Value
gene id CI01000059_04479563_04499562
gene name GATSL2, GATSL2.L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 4479083 ~ 4500428 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000059_04479563_04499562.mRNA
CTATTAAAACAAAAAAAAAAGAAAATAAATGAGATGGCATTTTAAAGACAACGAAAATCTGTATCGATTAACTTTGCAGCGCCGAACTACATTTCCCAACATGCACTTCCTGTATAATTCGTCCCGCCCCCTTTTTTTTTGACTGACAGGTTGTTTGTTTCACTGTTACCAGCTGCTGGCCCATTCCAATCCTTGTCGGAGTGGAAACACGGGGGCCGACAGTCCTCTTTTTTTCTCCCTTCCCGTTTACCTCGTTGTGCTTTCTTTTATTTCACCCCGCTTTACTCTCTTTCTCTCTTTTCCTCGGCAGATAACTTTTCCTTTTCTCTCCCCTCCTTTCCGCTCCGTTTGAAGGTTTTAAAGCCCTGTCCATAAGCTCTACTTAATTATTTATTTATTTATTCTTTCTTTTTTTTTTTATCAAAACGGAATAGTCAGTTAATATTTTTTAGATGTACCACAAATGAGAAGACGCAAAAGATGGAGCTGCACATTTTAGAGCACAGTTTAAAAGTAGCAAGTATAGCGAAAGAGGGAATCCAGATTTGCACTCACGGATTAATCAAACTAGCTTTTCTGCCCTCTAAAACAAGATGTAAGTTCTTTAGTTTAACCGAAACTCCGGAGGATTACACCATCATCGTGGATGAAGATGGCTTTAAAGAGCTGCCAGAATCTGAGTATCTCAGTGTGGCCGATGCGACATGGTTGGCTCTTAATGTGGTGTCCGGGGGCGGGAGCGCAACCAGCTCTCAGCCAATCGGAGTAACGAAAATAGCAAAATCAGTCATCGCCCCGTTGGCAGACCATAATATCTCTGTATTCATGCTGTCGACATACCAGACTGATTTTATATTGGTTCGAGAGAGGGATCTGCCCATGGTCATGCACACGCTGTCTTCGGAATTCACTCTGCTGAGGGTTGTCAACGGAGAAACTGTTGCTGCCAACAGTACCGGGGTCACCAATGGTTTTGTCAAGCCTAAACTGGTGCCTCGGCCAATCATTCACCCACTCTCCAGCCCCAGTAACATGTTCTGCGTTACCAGCCTTGACCCCGACACGCTGCCCTCGGTGGCCACGCTGCTCATGGACGTCATGTTCTACTCGGGCGGAGCGAAAGAGACCGGGGGGCAGAGCGAGGATTCTGGACACATCCGCTTTTTCTCCTTCTCCCTGATCGAGGGCTACATCTCTCTAGTTATGGATGAGCAGACGACTCGGAGGTTTCCAAACAATGTCCTCTTCACCAGCGCATCAGGAGAGCTTTGGAAAATGGTCCGCATTGGAGGACAACCCTTAGGGTTTGATGAATGTGGCATTGTGGCTCAGATATCTGAACCGCTGGCGACCGCTGACATTCCAGCCTATTATATCAGTACCTTCAAGTTCGATCACGCTCTGGTTCCTGAGGAAAACATCCAGAGTGTGATCGGAGCCTTGAGGACCAATGAGAGCACAGGACATGCCAAGACACGGGGCATAAACACACTCCTTGTCTAAAACATGATGTTTTTCTGGATGCTATTTGATGGTTCAGGGGTTTTTTGTGTGTGTTCTGCAAAATGGTCCAGTCACAAGTTCAGTCTGTGAAAGAAGCTTTTCACGCTCATTGTTTGGAAAGTTTACCATTTTTATTTAGAGCTTTTGTTTCTTTCCCCTCACCTCAATCTTATGTTCACGTTTCAATGCCAAGTGGCTGGGTAATGAATTAGTAGTTGTTGTTGTTGCTGCTGTTGTTGTTTTTTGCCTTCAAAGTACAATCAATGGGTTTTCTGTCCACCCGGCCGAGTTGGCAGCGATTGGAAACAAGGATTCAGGTGAGGTGAAACTGATCACATGCCCTTGTTCAGGTTAAATACACATACACGAATCGTGCAGTTTACTGTAATACTGTTTTTAAACGCTCGGTCTGATGGGGACGTCATTTTTATTTCCGCCCTGGAGTCGTTGCGCGCTTGCGTACGCACAAAATGCCTCTTTAGTCTTCACCACTACTCGCTCTTTTGGGTATTTTGCAAAGCTGTCTCTTCATTCACGGAGGAAACTGTTGGGGGAACCTGTCGTTTGTTGAATGTTAGTTAAGGTCAGGTGTCACAGACACTGGCGTTAGTTTAGGCCTTCAAGCTCCCCTTGTCTGCACTTTATTTAAGGTCTATCTTACAGATCTTACTCTTCTGATGTGAAATACCGGGGATGAGTATCTTCCCCTTGAAGGAGTCTCTTTTAGAAGGGGTCACTTGTTGCTTTTTAGACCTGGATGGGTGTCTTTTTCCACAAGCTTTTCTTCTATCAGCTATGAAGCAGAAATTTGCAAAACCATACATTTATCAGTGTTAAGAAGGGGTGACCTGTTTGTTTTCTGACAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000059_04479563_04499562.mRNA True 2369 mRNA 0.45 10 4479083 4500428

Neighbor

gene id symbol gene type direction distance location
CI01000059_04472236_04475254 NA coding upstream 3350 4471743 ~ 4475733 (+)
CI01000059_04427836_04462926 DOC2A, DOC2B coding upstream 16128 4427836 ~ 4462955 (+)
CI01000059_04381041_04393828 NA coding upstream 85036 4380956 ~ 4394047 (+)
CI01000059_04337486_04338454 NA coding upstream 139366 4336934 ~ 4339717 (+)
CI01000059_04246322_04249682 NA coding upstream 228837 4246259 ~ 4250246 (+)
CI01000059_04533856_04536270 RPO2J, POLR2J, POLR2J.S, POLR2J2, POLR2J3 coding downstream 33101 4533529 ~ 4536388 (+)
CI01000059_04537580_04540637 ALKBH4 coding downstream 37152 4537580 ~ 4540818 (+)
CI01000059_04542374_04554071 NA coding downstream 41946 4542374 ~ 4554926 (+)
CI01000059_04558576_04590484 BCKDK coding downstream 58148 4558576 ~ 4590721 (+)
CI01000059_04597371_04601178 ORAI2, ORAI1.S, ORAI1 coding downstream 96899 4597327 ~ 4601347 (+)
G253504 NA non-coding upstream 8568 4470270 ~ 4470515 (+)
G253482 NA non-coding upstream 54033 4385446 ~ 4425050 (+)
G253380 NA non-coding upstream 66370 4395203 ~ 4412713 (+)
G253451 NA non-coding upstream 164568 4313072 ~ 4314515 (+)
G253509 NA non-coding downstream 28655 4529083 ~ 4529292 (+)
G253377 NA non-coding downstream 101350 4601778 ~ 4602016 (+)
G253369 NA non-coding downstream 101701 4602129 ~ 4603851 (+)
G253383 NA non-coding downstream 106352 4606780 ~ 4607960 (+)
G253548 NA non-coding downstream 181247 4681675 ~ 4682157 (+)
G252732 NA other upstream 1275992 3202739 ~ 3203091 (+)
CI01000059_02133197_02134625 NA other upstream 2343905 2133003 ~ 2135347 (+)
CI01000059_02068570_02070710 NA other upstream 2407159 2068544 ~ 2071924 (+)
G251249 NA other upstream 2817693 1627766 ~ 1661390 (+)
G251017 NA other upstream 3411726 1056252 ~ 1067357 (+)
G253654 NA other downstream 737331 5237759 ~ 5238233 (+)
G254692 NA other downstream 1759615 6260043 ~ 6261633 (+)
G255434 NA other downstream 2944514 7444942 ~ 7450195 (+)
G256046 NA other downstream 3853791 8354219 ~ 8354873 (+)
CI01000059_08640558_08653639 NA other downstream 4131523 8640451 ~ 8654233 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030546 castor2 coding NC_007116.7 CM002889.2 61361815 ~ 61403813 (+)