XLOC_030558 (hnrnpul1l)


Basic Information

Item Value
gene id XLOC_030558
gene name hnrnpul1l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 61799629 ~ 61820009 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059656
ATGAGCGGGCTCAATGTCAAGAAGCTCAAAGTCAATGAGCTGAAAGAGGAGCTCCAGAAGCGAGGCCTGGACACTCGCGGGCTGAAGGCGGACCTGGCGGACAGATTGCAGGCGGCGCTGGAGGCCGAGGAGGCCGGGGGTGCACCGTCCGACGAGCAGGAGAAAGAAGACTTTGAGACCGGAGGAGAGCCTGGAGAGGGCAGTGATGATCAGGAGGATGAATTTGCAGACAGGGAGCAAGATTTTGGAGAAGAGGCCAAGGCACAGTTTGACGATGGAAACAGCACGGATCTCTTCCAGGAGCAGAAAAAGCAGTTCCAGGAGCCTAAGGCCATGCAGGAGTACCGGGAGGATGAGGTGAAACAGGAGTTAGAGGAGTCTCCATCACATCCAGAGCCACAGGAGGAGCAGAACTTCGAAGAACCAAAATCACGGCAGATCCCAGAGGAAGACTCAAATAAACGCAGCCAGCAGGAAAATTCCGGGCGTTATGATGTGAAGTCCGAGTATAAGGCTGATGAGGATGCACCACAGCAGGCTGAGCGGTCCAGCGAGTGGGATGCACAGGCCAAATCAGAGGATGACCGACACAGCTCACATAGTCGTAAAAGATCCCATGATGAGAGTCGAGGATATGGCTACTACGAGCACCGTGAAGAAAGAAGGGGAAGATCACCTCAGCCTCCAgctgaagaagaagaggaagacatTGATGATAATCTTGTTGTAATTGACACCTACAACTGCGACCTGCACTTCAAGGTGGCTCGTGACAGATACAGTGGTTACCCGCTGACTATTGAGGGATTTGCTTATTTGTGGGCAGGTGCTCGTGCGACTTATGGCGTTAACAAAGGACGTGTCTGCTTTGAAATGAAGATAAATGAGGAAATTCCAGTAAAGCACCTTCCTAGCACTGAGCCTGACCCTCATGTGGTGAGAATCGGATGGTCCCTAGATTCATGCAGCACTCAACTCGGTGAAGAACCCTTCTCATTTGGCTATGGAGGAACTGGCAAGAAGTCTTGCAACTGTAAATTTGAGGACTATGGGGAAAAGTTCACTGAAAGTGATATCCTTGGCTGCTATAttGACTTTGAAAGCAGCGAGGAAATAGAGATCGCATTCTCCAAAAACGGCAAGAGTCTGGGCTCGTGTTATCGTGTCTCTCGAGAGGAACTGGCTGGACGTGCCCTTTTTCCACATGTGTTGGTGAAGAACTGTGCTGTGGAATTCAACTTTGGACAGAGGGAGGAGCCCTATTTCCCGCCACCAGAGGGCTTCACCTACCTTCAGGATATTTCTCTGGAGGACAGAGTCAGAGGCTCAGTGGGACCTGCCAACAAAACTGACTGCGagaTCCTGATGATGGTTGGTCTGCCTGGTAGTGGAAAAACTACTTGGGCCCTAAAATATGCAAAAGAGAACCCTGAAAAGAAGTTCAACATCCTGGGCACCAATGCTATCATGGAAAAGATGAAGGTCATGGGTCTTCGTCGGCAGCGCAACTATGCAGGACGCTGGGATGTGCTTATCCAGCAGGCCACACAGTGTCTCAACAGGCTCATCCAGATTGCTGCCCGCAAGAAGCGCAACTACATCCTGGACCAGACAAATGTATATGGATCAGCCCAGAGACGAAAAATGCGTCCTTTTGAAGGTTTTCAACGCAAGGCTATTGTAATTTGTCCCACGGATGAGGATTTAAAAGATCGAACGTTAAAGCGAACTGATGAGGAAGGGAAGGATGTTCCCGATCATGCTGTATTAGAAATGAAAGCAAACTTTGTGCTGCCTGACGTTGGTGAGTTCCTGGACGAGGTGAGGTTCATAGAGCTTCAGAAGGAAGAAGCAGAAGCTCTCATCAAGCAATACAACGAAGAAGGCCGTAAAGCCGGGCCGCCCCCAGAGAAGCGTTTCGATAACCGCCAGAGTGGTTTCCGCGGTCGCAGTAACTTCCAGCGCTACGACAATCGTAGCGGACCGCAGGGTAATAGAAGTGGCTACCAGAACCGTGGCAGCTCAGGAGGCGGAGGCGGAGGCTTCAGAGGAGGATACAACCGTGGAGGCTACAACCAGAACCGCTGGGGAAATAACTACAGGGATGGAGGCTCAGGAGGCCGCGGTGGATACAACCGCAACCAGCAGTCTGGAGGCAACTATAACCATAACCGCCAGGGCTCCTACAACAAGACCGTTTCTACAACATCCGGAGGATACAGCCAGCCACAGCCTCAGGCTTATAATCAAGGCTACAACCAGGGTTACACCCAGAGCAGCTATAACCAAGGGTATAACTACAGCAACTACAGCCAGTACCCAGGATACAGCCAGAGCTACAGTCAAGCCCCAGCAGCCACAGCACAGACCTACAACCAGCAGCAGCAGAGCTACAATCAACAATACCAGCAGTATGCTCAGCAGTGGCAGCAGTACTACCAGAACCAGAGCCAGTGGAACCAGTACTATAACCAGTACGGCGGTTACGGCAACTACCAGCAGGGAGCTCAAGGCAGCCAGGGAGCCCAGGGAACACAGTAG

Function

symbol description
hnrnpul1l Predicted to act upstream of or within RNA processing and response to virus.

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0009615 response to virus biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-890 Predicted to act upstream of or within RNA processing and response to virus.

Ensembl:

ensembl_id ENSDARG00000079780

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059656 True 2541 mRNA 0.52 16 61799629 61820009

Neighbor

gene id symbol gene type direction distance location
XLOC_030557 RASL10B coding upstream 44584 61738276 ~ 61755045 (+)
XLOC_030556 ap2b1 coding upstream 75547 61657010 ~ 61724082 (+)
XLOC_030555 NA coding upstream 168056 61601806 ~ 61631573 (+)
XLOC_030554 NA coding upstream 198392 61588608 ~ 61601237 (+)
XLOC_030552 NA coding upstream 218356 61579446 ~ 61581273 (+)
XLOC_030559 CR759879.1 coding downstream 19698 61839707 ~ 61858669 (+)
XLOC_030560 sympk coding downstream 42190 61862199 ~ 61892917 (+)
XLOC_030561 rsph4a coding downstream 99208 61919217 ~ 61930860 (+)
XLOC_030562 si:dkeyp-117b8.4 coding downstream 121601 61941610 ~ 61951039 (+)
XLOC_030563 ehd2a coding downstream 156502 61976511 ~ 61992423 (+)
XLOC_030553 NA non-coding upstream 218861 61579953 ~ 61580768 (+)
XLOC_030545 NA non-coding upstream 445100 61349733 ~ 61354529 (+)
XLOC_030567 BX511157.1 non-coding downstream 265808 62085817 ~ 62085934 (+)
XLOC_030572 CR394528.1 non-coding downstream 822915 62642924 ~ 62712620 (+)
XLOC_030573 NA non-coding downstream 823197 62643206 ~ 62710728 (+)
XLOC_030574 BX510960.1 non-coding downstream 879739 62699748 ~ 62704404 (+)
XLOC_030577 AL928675.1 non-coding downstream 1067119 62887128 ~ 62887243 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000059_04738121_04755527 HNRNPUL1 coding CI01000059 null 4737897 ~ 4756037 (+)
bowfin (Amia calva) AMCG00013643 hnrl1,LOC106603088 coding CM030125.1 CM030125.1 38360157 ~ 38374489 (-)