XLOC_030563 (ehd2a)


Basic Information

Item Value
gene id XLOC_030563
gene name ehd2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 61976511 ~ 61992423 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059664
ATGTCTGCCAAAGGAATGAGGAACAGGGGTGGTAAATGTCTGAAGGCGGTTCATACAGTAACCGAGGCTTTGAAAATCCTCTATCGGCAAAAACTGCTCCCACTGGAGAAGTACTATGGTTTCTCCGATTTCCACTCATCAAGCCTTGAAGATGCAGACTTTGACAACAAACCCATGATACTGGTGTTGGGCCAGTGCTCTACAGGCAAGACCACTTTTATCAGGTATCTTCTTGAACAGGAGTATCCTGGAAGCAGAGTTGGCCCAGAACCGACAACCGACAGTTTCACAGCAATAATGCATGGAGAGATGGAGGGAATTATTCATGGCAATGCTTTAACTGTTGATCCCAATAAGCCTTTCCGCAAACTCAGCCCATTTGGAACAACTTTCCTAAATCGATTCCAGTGTGTACATCTGCCCAATCGGGTCCTAGAGAGCATCAGCATCATCGACACACCAGGGATCCTGTCTGTGGCCAAGCGCAAAATGGACAGAGGTTATGACTTTCCTTCAGTTATCCGCTGGTTTGCGGAGCACGTAGACCGGATCATCCTCCTGTGTGATGCACACAAGCTGGAGATTTCTGATGAGTTTTCCCGCACTATACTGGCATTACGAGGCAATGAGGACAAGCTCCGAGTGGTGCTCAACAAGGCCGACATGGTGGACTCGCAGGAGCTGATGCGGGTCTACGGCGCCCTCATGTGGTCTCTCGGGAAGGTCTTCTGCACCCCGGAGGTCCTGAGGGTCTACATCGGCTCCTTCTGGACCGCTCCGATGCGAATCACAGACAACCGCAAACTGTTTGAGCGAGAGGAGGGAGATCTTTTTGCAGACCTTCAGAACCTGCCAAGAAATTCTGCCCTGAGAAAACTCAATGATCTGGTGAAACGAGCACGCCTTGTAAGGGCTCATGCTTATATCATCAGCTGTCTAAAAGACGAGATGCCTGTTGTTTTCTGCAGAGGAAAGAAGCGGCGAGATCTCATCTATGACCTTCCCACCATCTATTCCAGAATCCAACAGCGCTATCAGATTTCACCAGGAGATTTTCCAGACTGTGCCAAGATGCAGGAGCGACTCATGAGCCACGACTTCAAGTTTAAAGGCCTCAAGCCCAAGCTCTTAGCTGGGTTGGATGAGCTCCTAAACACCGACATTGCTAAGCTGATGCCTCTTCTACGCCAAGAGGAAGAAGAAGCAGCTGATCAACTTTTAATACAAGGAGGACCTTTAGGGTCTCACAGGGGCCCGTTTATTGTGGGGAACCCATTTCATCACTCTGGATCCAATGGAGAAATCGATCAGGCGTCAAATGATGAATGGGTGGTGTCAAAAGATAAAGCAAAGTACGACGAGATCTTTTACAACCTCTCGCCTCATGAGGGAAAGCTGACTGGGACTAAAGTGAAGGAGTGGATGTTGCGCACTCATCTGCCCAGCTCGGTCCTGGGACGAATCTGGAAGCTGGCAGATGTGGATTGTGATGGTAAGTTGGACGATGAGGAGTTTGCTTTGGCCGGTCAtctcattgaggtaaagttggaaGGTTTTGGGCTTCCTCATGAGCTGCCCACACACCTGCTGCCACCGTCTAAAAGACACCGCAAGAACTCTGAGATTACCGACGATGATTAG

Function

symbol description
ehd2a Predicted to enable ATP binding activity; GTP binding activity; and calcium ion binding activity. Predicted to be involved in several processes, including cilium assembly; endocytic recycling; and protein localization to plasma membrane. Predicted to act upstream of or within actin cytoskeleton organization. Predicted to be located in endosome and membrane. Predicted to be active in cytoplasmic vesicle; perinuclear region of cytoplasm; and plasma membrane. Orthologous to human EHD2 (EH domain containing 2).

GO:

id name namespace
GO:0072659 protein localization to plasma membrane biological_process
GO:0006897 endocytosis biological_process
GO:0016197 endosomal transport biological_process
GO:0032456 endocytic recycling biological_process
GO:0060271 cilium assembly biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005769 early endosome cellular_component
GO:0030139 endocytic vesicle cellular_component
GO:0055038 recycling endosome membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060531-86 Predicted to enable ATP binding activity; GTP binding activity; and calcium ion binding activity. Predicted to be involved in several processes, including cilium assembly; endocytic recycling; and protein localization to plasma membrane. Predicted to act upstream of or within actin cytoskeleton organization. Predicted to be located in endosome and membrane. Predicted to be active in cytoplasmic vesicle; perinuclear region of cytoplasm; and plasma membrane. Orthologous to human EHD2 (EH domain containing 2).

Ensembl:

ensembl_id ENSDARG00000035137

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059664 True 1641 mRNA 0.49 6 61976511 61992423

Neighbor

gene id symbol gene type direction distance location
XLOC_030562 si:dkeyp-117b8.4 coding upstream 25472 61941610 ~ 61951039 (+)
XLOC_030561 rsph4a coding upstream 45651 61919217 ~ 61930860 (+)
XLOC_030560 sympk coding upstream 83594 61862199 ~ 61892917 (+)
XLOC_030559 CR759879.1 coding upstream 117842 61839707 ~ 61858669 (+)
XLOC_030558 hnrnpul1l coding upstream 156502 61799629 ~ 61820009 (+)
XLOC_030564 selenow1 coding downstream 6218 61998641 ~ 62005081 (+)
XLOC_030565 akap10 coding downstream 17342 62009765 ~ 62043299 (+)
XLOC_030566 si:dkey-35m8.1 coding downstream 60115 62052538 ~ 62289065 (+)
XLOC_030567 BX511157.1 coding downstream 93394 62085817 ~ 62085934 (+)
XLOC_030568 pho coding downstream 326794 62319217 ~ 62335694 (+)
XLOC_030555 NA non-coding upstream 344938 61601806 ~ 61631573 (+)
XLOC_030554 NA non-coding upstream 375274 61588608 ~ 61601237 (+)
XLOC_030552 NA non-coding upstream 395238 61579446 ~ 61581273 (+)
XLOC_030553 NA non-coding upstream 395743 61579953 ~ 61580768 (+)
XLOC_030545 NA non-coding upstream 621982 61349733 ~ 61354529 (+)
XLOC_030572 CR394528.1 non-coding downstream 650501 62642924 ~ 62712620 (+)
XLOC_030573 NA non-coding downstream 650783 62643206 ~ 62710728 (+)
XLOC_030574 BX510960.1 non-coding downstream 707325 62699748 ~ 62704404 (+)
XLOC_030577 AL928675.1 non-coding downstream 894705 62887128 ~ 62887243 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000059_04856861_04864485 EHD2A coding CI01000059 null 4856818 ~ 4865032 (+)