RNA id: TCONS_00059637


Basic Information

Item Value
RNA id TCONS_00059637
length 76
RNA type snoRNA
GC content 0.34
exon number 1
gene id XLOC_030545
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 61349733 ~ 61354529 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTGTAATGATGATTGGCATAAATGTTCAACTGCTCTTAAAAACCATGAAAGAGGATTTGCCTTTCtgaacatgt

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0030687 preribosome, large subunit precursor cellular_component
GO:0030688 preribosome, small subunit precursor cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko04623 Cytosolic DNA-sensing pathway
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000116668

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061819 lncRNA upstream 574397 60763937 ~ 60777523 (+) False XLOC_030539
TCONS_00061820 lncRNA upstream 574397 60764178 ~ 60777523 (+) True XLOC_030539
TCONS_00061818 lncRNA upstream 638180 60702425 ~ 60713740 (+) True XLOC_030538
TCONS_00061817 lncRNA upstream 1125447 60225573 ~ 60226473 (+) True XLOC_030536
TCONS_00061816 lncRNA upstream 1273408 60074077 ~ 60078512 (+) True XLOC_030533
TCONS_00059639 lncRNA downstream 1686 61353681 ~ 61354393 (+) False XLOC_030545
TCONS_00061828 lncRNA downstream 227451 61579446 ~ 61581273 (+) True XLOC_030552
TCONS_00061829 lncRNA downstream 227958 61579953 ~ 61580768 (+) False XLOC_030553
TCONS_00061830 lncRNA downstream 236613 61588608 ~ 61601237 (+) True XLOC_030554
TCONS_00061831 lncRNA downstream 249811 61601806 ~ 61631573 (+) True XLOC_030555
TCONS_00059632 mRNA upstream 22264 61301525 ~ 61329656 (+) True XLOC_030543
TCONS_00059627 mRNA upstream 22433 60919378 ~ 61329487 (+) False XLOC_030543
TCONS_00059641 mRNA downstream 9820 61361815 ~ 61403813 (+) True XLOC_030546
TCONS_00059642 mRNA downstream 107427 61459422 ~ 61465028 (+) True XLOC_030547
TCONS_00059643 mRNA downstream 115623 61467618 ~ 61472766 (+) False XLOC_030548
TCONS_00059644 mRNA downstream 115630 61467625 ~ 61472766 (+) True XLOC_030548
TCONS_00059646 mRNA downstream 123456 61475451 ~ 61504525 (+) False XLOC_030549
TCONS_00059636 other upstream 419 61351368 ~ 61351501 (+) False XLOC_030545
TCONS_00059631 other upstream 91853 61259952 ~ 61260067 (+) True XLOC_030544
TCONS_00059624 other upstream 575922 60775881 ~ 60775998 (+) True XLOC_030540
TCONS_00059620 other upstream 1596659 59755144 ~ 59755261 (+) True XLOC_030535
TCONS_00059609 other upstream 1872091 59436500 ~ 59479829 (+) False XLOC_030529
TCONS_00059638 other downstream 336 61352331 ~ 61352465 (+) False XLOC_030545
TCONS_00059640 other downstream 1799 61353794 ~ 61353917 (+) True XLOC_030545
TCONS_00059645 other downstream 123351 61475346 ~ 61487595 (+) False XLOC_030549
TCONS_00059650 other downstream 228604 61580599 ~ 61580697 (+) True XLOC_030553
TCONS_00059672 other downstream 733822 62085817 ~ 62085934 (+) True XLOC_030567