RNA id: TCONS_00059629


Basic Information

Item Value
RNA id TCONS_00059629
length 1138
RNA type mRNA
GC content 0.46
exon number 8
gene id XLOC_030543
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 60919378 ~ 61329656 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttgAAAGGCCCATGATTGATATTATGCATGTTTGTTATCACAATATATAGAATTATTGAATATCGACATATGTCTAGTTGCAGCTGTGTATATATGGGGgtgttataattttatatttttacctGTTCTAAATTCAACAGATTTTTTGATAATGATTTCAATGATTCTGATCTTTTACAGCAGCAAGCAAAACATGACAGACACAATGTTCGGCAGTGAGAACGAGCAGTGGGTCTGTCCAAATGACAGGCAACTCATGCTTAGAGCAAAGTTGCACACTGGTTGGTCCATCCACACGTTTCAGTCAGAGAGACAGAGGAAAGCTCAGGCGCTGGAGAAGAGAGAGCTGGATCTCATCATGAGTGTCATTCACCGCGCTGAGCAGCTCGAGCTCATTGAGCAACACCGCATCGGACGTCTAGTGGAGCGTCTGGACAACATGAGGAGCTCTGCCATGGGAAACGGCCTGTCACAGTGTCTGTTGTGTGGAGAAGTATTCGGTCTGCTGGGCTCTTCATCTGTTCTCTGTTTGGACTGCTGCATGAAGGTCTGCACTAAATGTGGAATCGAGACGACTGCAGGCGGTCAGAAACGGACCCAGTGGCTTTGCAAGATCTGCAGCGAACAGAGAGAGGTGTGGAAACGTTCAGGAGCCTGGTTCTACAAAGCCTTGCCCAAGCATATTCGTCCCATTAAGGATTCAATTCTAGATAACAGGAAGCCGGTAATAGAAAGAGGAGAACAACTGCCAGTGGCCAGGAGTGCACCAATCAGCTACACGTGGGCTCAAAGCAGAGTTTACTTGAGTGAAAGTGATGGCAGTGATGCTGAGCTCAGTGAATGCAGCAGTGACAGAAAGACCTTCGCTTCAGAGACCAATCAAAGAAGAGATTCTGAATCGAGTGGAGGCCAGGTTCAAACACCCCAATCCAGCTTTACCAGTCCAACTCGAGGCAACGTTCATATTGAAAGTCCATCCAGTTTGGTCAGCgagcaaagcagcagcagcagttttaacccTGGTCTGGAGGACGAGGTCATTGACCATAGCCGAACCTTACTGAAACCTGTGAACTCTTGTTTTGGATTTTATTTAGGCCAATGCAGTCAATGGCCTTACATCTTCTTATTCTTGTGA

Function

GO:

id name namespace
GO:0032024 positive regulation of insulin secretion biological_process
GO:0006886 intracellular protein transport biological_process
GO:0048791 calcium ion-regulated exocytosis of neurotransmitter biological_process
GO:0031340 positive regulation of vesicle fusion biological_process
GO:0045956 positive regulation of calcium ion-dependent exocytosis biological_process
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0005544 calcium-dependent phospholipid binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking

Ensembl:

ensembl_id ENSDART00000179772

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061819 lncRNA upstream 156822 60763937 ~ 60777523 (+) False XLOC_030539
TCONS_00061820 lncRNA upstream 156822 60764178 ~ 60777523 (+) True XLOC_030539
TCONS_00061818 lncRNA upstream 220605 60702425 ~ 60713740 (+) True XLOC_030538
TCONS_00061817 lncRNA upstream 707872 60225573 ~ 60226473 (+) True XLOC_030536
TCONS_00061816 lncRNA upstream 855833 60074077 ~ 60078512 (+) True XLOC_030533
TCONS_00059634 lncRNA downstream 314717 61349733 ~ 61354529 (+) False XLOC_030545
TCONS_00061823 lncRNA downstream 314939 61349955 ~ 61354529 (+) False XLOC_030545
TCONS_00061822 lncRNA downstream 314939 61349955 ~ 61354529 (+) False XLOC_030545
TCONS_00061821 lncRNA downstream 314939 61349955 ~ 61354529 (+) False XLOC_030545
TCONS_00061826 lncRNA downstream 314944 61349960 ~ 61354529 (+) False XLOC_030545
TCONS_00059626 mRNA upstream 27849 60886103 ~ 60906496 (+) True XLOC_030542
TCONS_00059625 mRNA upstream 61253 60847823 ~ 60873092 (+) True XLOC_030541
TCONS_00059623 mRNA upstream 246726 60590796 ~ 60687619 (+) True XLOC_030537
TCONS_00059622 mRNA upstream 249374 60518611 ~ 60684971 (+) False XLOC_030537
TCONS_00059632 mRNA downstream 266509 61301525 ~ 61329656 (+) True XLOC_030543
TCONS_00059641 mRNA downstream 326799 61361815 ~ 61403813 (+) True XLOC_030546
TCONS_00059642 mRNA downstream 424406 61459422 ~ 61465028 (+) True XLOC_030547
TCONS_00059643 mRNA downstream 432602 61467618 ~ 61472766 (+) False XLOC_030548
TCONS_00059644 mRNA downstream 432609 61467625 ~ 61472766 (+) True XLOC_030548
TCONS_00059624 other upstream 158347 60775881 ~ 60775998 (+) True XLOC_030540
TCONS_00059620 other upstream 1179084 59755144 ~ 59755261 (+) True XLOC_030535
TCONS_00059609 other upstream 1454516 59436500 ~ 59479829 (+) False XLOC_030529
TCONS_00059581 other upstream 2551699 58372223 ~ 58382646 (+) True XLOC_030512
TCONS_00059579 other upstream 2722061 58212161 ~ 58212284 (+) True XLOC_030511
TCONS_00059631 other downstream 224936 61259952 ~ 61260067 (+) True XLOC_030544
TCONS_00059636 other downstream 316352 61351368 ~ 61351501 (+) False XLOC_030545
TCONS_00059637 other downstream 316904 61351920 ~ 61351995 (+) False XLOC_030545
TCONS_00059638 other downstream 317315 61352331 ~ 61352465 (+) False XLOC_030545
TCONS_00059640 other downstream 318778 61353794 ~ 61353917 (+) True XLOC_030545

Expression Profile

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