RNA id: TCONS_00059622


Basic Information

Item Value
RNA id TCONS_00059622
length 3657
RNA type mRNA
GC content 0.51
exon number 8
gene id XLOC_030537
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 60518611 ~ 60687619 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCTGCCTCAACACGTCCAGTGGGAGCAGATGAATGTAATAGGGTAGTTTGTAGTCTGCCACGCTGGTGTCCAGGGAGGAGTGCCTTTGCTCTGGCTGTGAATGAGAGCTAAAGAGTTTATTACAGTTCGGGGCGAGGTGTGGTGAGACAGGGCGGTGTCTAGGCTTTGTCTCGGGCTGTAAGAGGAGAACGGGATCTGCTAGGAGGAGTCACACTCAAACAGGAACTGCAGAGAATAGATGGAGCGAGCGAATGTTGCTGTGGACTCACTCCGATCATGCTGCAGGGCAGGAGGTGCCTACGGAGCCTCTCAACAGGCACGAGTGATCAGTCTTTCTCAGATCTTTGAGCAGGTTTTGGATGCAGTTGGATTACTACAGAGAGGATCCTGCTAATGTGCTTTCAAGTTTGGAGACTTTGAACAGATTTTCAAAAGCTTGAACTGAGCTTGATCTCAATTTTTTCTACAGTTTGGCTTCAGCTGCATGGAtactctttttgtgtgtgtgtttgtacttgtGAGGTGATTCAGGTTGTGAAGTACCCTGTTTAAATGCAAAGCATTGGTGGAATATGGGACATTTTGTTGTTCAAGGGGATTTGCCATGGATTCTCTGTTCCCTCCGACTAGTCATTATGATAATTGCTGGTAAAGTTTCCCCTACCAGTTCCGATGCCCTCTTCAGTGTCCCTGTTCCCAGTGCCACCTCCAGCCCACCAGAAGTGTATCTCCCTGCCACCTTTAAGCTCTCCAACACACAGCTGGCCTTCTTTCTTCAGGAAAACCGAGCTCCATCATATGGCAGCCAGCGTGGACACCCTCTTCAGCGCTCGGAGAGCTTTGTGGTCTTCCAGACCAAGGAGCTTCCTGCGGTCAACATCTCACTTGGGCCTTTCACCCAAGACCAGACTTTGTCCAAGGATTTACTCCAGCCGTCAAGTCCTTTGGACATTCCTGGAAGGCTGACTGTCAACTGGAAGGTCCGGGCCTTTATTGTACAGTCTAGAGTTTATGCTAGTAACCCTCTGGTTCAGGTACTGTTCTATATTGCAGGCAGGGACTGGGATGACTTCAAGATTCAGGACAAGCTTCCATGTGTGAGGCTTCACGCTTTCAGAGATGTTCGGGAGATTAAAACATCCTGCAGGCTTCAGGGGAATCTGGCGCAGTGCTTGGCCCAACTGGACCTGCCTTCCACATGGTTTAATGTTAATGTAGCACCATTGGGCCGTAGAAAGTCCTCAGGGACGGATGGTCTTGAGCTGACTGGGGAGACTCTTCAAGTGGAGCTTTACTACACCCTCCATGATCCAGATAGCAATGATGAGTGTGGGGAGAGCTACCCACGCCGAGGAGGACCGTCCAGAGGCGAGAGCTTATCCCAACAACCCCTTCTCCGCATTGGGAGCATCAGTTTATACCAACCCAGTCAGGAACAACTGGTGGTAGACAAACAGCTTGACAAGAACCTCTTTCTGAGGCTGCCAGAACGGCCATTAAAGCCAGGAGAGACCCTCAACATCTATCTGCTCTTGGTTCCGAATTCTACAGTGGAGCAGTTTACGTTAAAGGACATGGCTGGGAGTATTGAAATCATGCAGCTAGACTTCGAGATGGAGAATTTCACCAGCCAATCAGTCACTAGAAGGATCAACTGGAATATTGATTACCGGGGCCAGAATCCGACCTCGGATGCTGAGAAGGTGGTCACCGAGCTCACGGTTGTGCAGAAGGACATCCAGGCCATCATTCCACTTTCAATGGACACAGAGATCATCAACACGGCGGTTCTCACTGGCCGAACTGTGGCCATCCCTGTCAAGGTGGTTTCTATTGAGTTAAATGGAGCAGTCACCGATGTTTCATCCTCTGTGCAGTGCAAGTCATTCAACGAGGACATCGTCAAGGTGTCCATGAACTGTGACTATGTGTTTGTGAATGGAAAAGAGACGCGTGGCTCCATGAACGCTCGGGTGATTTTCAGCTATGAGCACCTGAGTGCCCCTCTTGAGCTCACTGTCTGGGTGCCCAAACTGCCCCTTAAAGTGGAGCTCTCAGACAACAGACTGAGCTTCATCAAGGGCTGGAGGGTGCCAATTTTACCCGACCGCAGAACGGCCAGAGACAGTGATGACGACGATGACGATGACCGCAAAGTGAGCCGGGGATGTACACTCCAGTACCAGAGGGCCCAGATTAAGGTTTTGACCCAGTTCCACACAACTTCATCTGAAGGCACAAATCAGATGATAACCATGCTGGGTCCAGACTGGCAAGTGGACGTGACGGAGCTGGTGCAAGACTCCCTGAAAGTGGTAGATGGACGGGTGGCCGAGCTGGCGGACAGGACAGTGCTAGTGGCCAACGAGCTTGGATCGTCCACTCTGAAGGTTGAATCCCCACTGGCAGTGGAGGCGGTACTGGGTGAAACGCAGTTCTCTGTGGTAGACGAGAAAGTGTCTATAGTGGAGCTGCGTGTTCATGCCATCTCAGGACTGGCACTTAATCTTCAACCAAGCCCTGGAAACAGCCATACCATGGTTGCCAAGGCAACTGGACTGCAGACTCTCTCCACTCTTAAGCAGgAGGCCAGCTTTTCCATCTGGGTTTACTACAGTGACAATACAGCAGCTCCACTGAGTATGTATGATCCTAAAGACTACAACCTCAATGGCACTTCAGCGGATGATAAGGTGGTCACGGTGGCACAACAACCCCAACAGCGGTGGCCAGTCATCATCGCTGAGGGTGAGGGCACAGGAGACATAGTTCATGTGGAGATGACCATCTCTGAAACCTGCCAGAAGACCAAACGTAAGAGCGTAATTGCTTCATCTTCTGTGTTTGTCAAAGTCCGATTTGGAACAGATGAAGACTCTGAGGAGGATATGGAGATGGAGACTGAAATAGACACTAGAATGCCTGCCAACACAAGAAGGCCCGCTATTGATTCCAATGTGGGTGGTGCAGGGTATGAACCATCTAATGAGCAACCCGCAAGTGTACCCATTGATTACACAAACTTCCCTACGATAAGCAATCCGGAAGAACCAACTGAAGAAGACGAAGAGGATGATGAGTTTGTGCACAGTCCACGTAGCATGACTGACCTAGAGATCGGCATGTATGCTCTTCTTGGGGTGTTTTGTCTTGCTATACTGGTCTTTCTTATAAATTGTATCGTGTTCGTATTGAAGTATCGCCATAAGCGCATTCCTCCTGAAGGCCAAGCCAACATGGACCATTCCCACCACTGGGTTTTCTTGGGTAATGGGGAACCCCTGCGCACCCAGAGTGACCTCTCACCCCAGACAGTAGAGAGCCCAAGCAACACTTTGGAGGGGGTTCAGACTTGCTGTCACGGGGACCACCACAGCAGCGGCAGCTCTCAGACCAGCGTACAAAGCCAGGTCCACGGTCGAGGAGATGGCAGCTCTGGAGGTTCCACCAAAGACCATGGAGAGGACGCCAGTTCACCAACCTCTAAACGCAAGCGTGTAAAGTTCACCACCTTTACTCTTCCCACAGAGGATTTACCCTATAACTCCATCCCCATTGCCAACGAAGAGGACATTCAGTGGGTATGCCAAGACATGGGTTTTCAGGACCAAGAGGAACTGCACGACTACATGCGCAGGATAAAGGAAATAGCCTGA

Function

GO:

id name namespace
GO:0060117 auditory receptor cell development biological_process
GO:0050910 detection of mechanical stimulus involved in sensory perception of sound biological_process
GO:0035677 posterior lateral line neuromast hair cell development biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-120926-3 Acts upstream of or within auditory receptor cell development; detection of mechanical stimulus involved in sensory perception of sound; and posterior lateral line neuromast hair cell development. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 99. Orthologous to human TMEM132E (transmembrane protein 132E).

Ensembl:

ensembl_id ENSDART00000186310

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061817 lncRNA upstream 292138 60225573 ~ 60226473 (+) True XLOC_030536
TCONS_00061815 lncRNA upstream 296471 60042363 ~ 60222140 (+) False XLOC_030533
TCONS_00061814 lncRNA upstream 402723 60042363 ~ 60115888 (+) False XLOC_030533
TCONS_00061813 lncRNA upstream 425198 60042363 ~ 60093413 (+) False XLOC_030533
TCONS_00061810 lncRNA upstream 435873 59752812 ~ 60082738 (+) False XLOC_030533
TCONS_00061818 lncRNA downstream 17454 60702425 ~ 60713740 (+) True XLOC_030538
TCONS_00061819 lncRNA downstream 78966 60763937 ~ 60777523 (+) False XLOC_030539
TCONS_00061820 lncRNA downstream 79207 60764178 ~ 60777523 (+) True XLOC_030539
TCONS_00059634 lncRNA downstream 664762 61349733 ~ 61354529 (+) False XLOC_030545
TCONS_00061823 lncRNA downstream 664984 61349955 ~ 61354529 (+) False XLOC_030545
TCONS_00059617 mRNA upstream 923014 59553732 ~ 59595597 (+) True XLOC_030532
TCONS_00059615 mRNA upstream 923021 59553636 ~ 59595590 (+) False XLOC_030532
TCONS_00059616 mRNA upstream 923021 59553679 ~ 59595590 (+) False XLOC_030532
TCONS_00059614 mRNA upstream 925074 59553636 ~ 59593537 (+) False XLOC_030532
TCONS_00059611 mRNA upstream 967668 59494079 ~ 59550943 (+) False XLOC_030531
TCONS_00059625 mRNA downstream 162852 60847823 ~ 60873092 (+) True XLOC_030541
TCONS_00059626 mRNA downstream 201132 60886103 ~ 60906496 (+) True XLOC_030542
TCONS_00059627 mRNA downstream 234407 60919378 ~ 61329487 (+) False XLOC_030543
TCONS_00059628 mRNA downstream 243605 60928576 ~ 61329487 (+) False XLOC_030543
TCONS_00059629 mRNA downstream 249374 60934345 ~ 61035016 (+) False XLOC_030543
TCONS_00059620 other upstream 763350 59755144 ~ 59755261 (+) True XLOC_030535
TCONS_00059609 other upstream 1038782 59436500 ~ 59479829 (+) False XLOC_030529
TCONS_00059581 other upstream 2135965 58372223 ~ 58382646 (+) True XLOC_030512
TCONS_00059579 other upstream 2306327 58212161 ~ 58212284 (+) True XLOC_030511
TCONS_00059578 other upstream 2480725 58037772 ~ 58037886 (+) True XLOC_030510
TCONS_00059624 other downstream 90910 60775881 ~ 60775998 (+) True XLOC_030540
TCONS_00059631 other downstream 574981 61259952 ~ 61260067 (+) True XLOC_030544
TCONS_00059636 other downstream 666397 61351368 ~ 61351501 (+) False XLOC_030545
TCONS_00059637 other downstream 666949 61351920 ~ 61351995 (+) False XLOC_030545
TCONS_00059638 other downstream 667360 61352331 ~ 61352465 (+) False XLOC_030545

Expression Profile

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