XLOC_030531 (gtf2ird1)


Basic Information

Item Value
gene id XLOC_030531
gene name gtf2ird1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 59494079 ~ 59550943 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059611
TACTGGATTACAGAACAAAGAAAGGGGAAAGGGGACACACTCCTCTGTTAAAGAAAACAGAGAGAAAACCGGGCAAACTCATCAAATAAATCACACCGAATGCTTTTCGACAGACTACAGACCTTTCGAGATTATGACATTTAGCAAAGTCGCTGTCGCCTTTCTTTAGATGGGAATTCGGCTCTCACTGTTGGATTAAACGGAGAATAAACCTATTCCGGGATTGACAGCATAAGAAGAATGGCTCAGATACGGAAGTTGGGCTGTGATGGGATGAGAACAAACTCTCGACCAGAGCTCAAAGTTCCCCAAGTCTCAGCCAGACAAGAGATCCTCACCAGCCTTGTGTCTGCTCTGGACTCGGTGTGCTCCGCCATGTCTAAGCTGAATGCTGAGGTGGCCTGTGTCACTGTGCATGAGGACAGCGTGATCGCAGTGGGAACAGAGAAGGGAAGAATCTTCCTGAACTCCAGAAAGGAAATACAGACTGACTTTCACAAGTTTTGCAAAGTGTCCTGTCTACAAGCGCTAAACTCCATGAACTCCCACAGCAAAGTTCCTGAAGTAGACTGCAGCAGGACTGGCAAAGACAGCAGCGGGCAGCAGGGCAGACAGAGAGCCTTAACAGACACTCATTCCAACATCTTCGTCCTGAGGAAGATGGTGGAGGAGGTGTTCAGCGTGCTTTACAGTGAGGCTGTTGGGAAGAGCAGCCTGGTCCCTGTGCCTTATGACTGGATTCTCAAGGATCCAAGTTCAGTAGTGGTGTACGGCCTGCCTGACGGTGTGACTTTGAGAAAGCCTTCGGAATACGACACCAAGACCTTAATGAAGATCTTAGAGCAGAGCAACCGCATCCGATTCATAGTCAAAAGAACGCCGGAGGAACCCTCACGGGAAGCCAAATCCTGTCCGGAAGTCAACCATCACTCTTCGACCTCAAAGAGCGCTAGCAACCACACCTCAGTCAAACCCTCAGTGCAGGAAGTATCCGCCAGCAACTCCATGCTCTCCAGCTTCCTGTACGGGATGCCCATGTCCTCCCAGCCTCACTCGGACAGCAAGCTGGACCTCAAGCCAACGTCACTGCACAGCATCGGCAAAGAGCGGCCGGGCATGTGGACGCCCGCCGAGGAAAAAGCCGTTCAGGCCAAGGAATGTGCTGACAATGGCGAGCGAATAGGGCTGGCAGCAGATCTTACCCAGAGCCCTCCCAGCATCCATGTCTCCAAGCGCCTTCTGTTCTCCATAGTGCATGAAAAATCAGAAAAATGGGATTCGTTCATCAGGGAGACGGAGGATATCAATACCCTTCGAGAATGTGTTCAGATCCTGTTCAACAGCAGATATGCCGAGGCATTAGGCCTGGATCACATGGTTCCTGTGCCATACCGTAAGATCGCTTGTGATCCTGAGGCCGTGGAGATCATTGGGATTCCCGACAAGATTCCCTTCAAGAGGCCATGCACTTACGGTGTGCCTAAACTCAAGCGCATCCTGGAGGAAAGGCACGCCGTCCGCTTCGTTGTCAGAAGAATGTTTGATGAACGGATTTTTACTGCTGCTGGTAAAGTCGCAAAGGAGGAGGGCAAACAGGATGGACCTGCCTCTGAGGATGGTTTTCCAGAAGGCCTCAGGATCCCAAGCTCTTCTTTAGAGCTGGTCAGCAACACTCACAGCAGCAGatcaacCAGCTCCTGTGTCAGTCCTTTGGCCGAGTGTGAAGCAGggcCATCTGGGGACTGCCTGCCTTTGAAAAAGATCAAAACAGAACCCCCAGATGGTGAAATTATCCAGGTGACGGTGCCAGAATCCAGTGCTTCAACAGAGGAATCCAGTGAGCCTCAGGCTGAGCGAGTGACCCCTGACCTCTGTCGTCCCAAGGAGCCTGTCGCAGAAGATTTAACACCGAAATCTACACCGCAAGGGCTCAAGAGAGCTGTTGAAGACATCGGAGAGATGATCCTTCAGCTGCGAAAGCAAGTCGAGAGCCTGTTCAGCTGCAAGTACAGTGAGGCTCTTGGTCTGCCTGAACCAGCTAAGGTGCCGTACTCCAAGTTTCAGATGTATCCAGATGACCTGTACGTCACGGGGCTGCCTGAAGGCATGACTTTTCGAAGGCCAAACTGTTTTGGAGCAGCTAAACTCAGAAAAATTCTTTCTGCCAGCAGTCAGATTACTTTTGTTATAACGAGgccAGAATTGTTGACGGAACCGGTCAAAAGTGAAAGTGTCTCTAAGACGACCTCTGAATCAGCAGAGACTGACTCCAAAGACCAATCAGATGACCCAGGGCCTGCCTCCAAAAGACCTGGATTCTCAGACAGTTTAGAGGCCAAGCTCTCCCGTATCGACTTGGCGAACACACTACGAGAGCAAGTCCAAGACCTGTTCAACAGGAAATACGGCGAGGCACTGGGCATTAAGTATCCTGTGCAAGTGCCTTACAAGAGGATCAAGAGTAACCCTGGCTCGGTGATTATCGAGGGCCTGCCCCCTGGCATCCCTTTCCGAAAACCCTGTACCTTCGGCTCACAGAATCTAGAGAGGATATTAGCGGTGGCAGACAAGATCTCTTTCAGCATCACAAGGCCTTTTCAAGGGCTTATTCCCAAGCCAGCCAGTCAAATTATTTTTACCTTGACAGCACCGCGAAGGATAACCATATTGAAGAAAGGTTACACCCCAATAAGTGAAGAAGACGAGGTCAATCGAATGGGAGAGAAAGTGATATTAAGAGAACAAGTTAAAGAGCTCTTCAATAAGAAATACGGTGAGGCTTTGGGTCTGGATCGCTCAGTCATTGTTCCATATAAATTAATTCGAGCCAATCCAGGCTCACTGGAAGTGTGTGGACTTCCAGATGATATTCCCTTCAGGAATCCTAATACTTATGACATCGTTCGGTTGGAAAAAGTCCTGCAGGCCCAAGATGAAATTACTTTCAATATCAAAACCCCCCTACAGCCTTTTACAGAGTTGTGTACTCAGTCTTgtaataaagAAGGTAAAGAAGTGTCAACGAATCGACGCAAGCGCAAACGTGTACTTGAGTCCAGTCAGACATCCATGCCCACTGCAGGAGACTCAGCGCTGTCAACCAATCAGATACCTGTCATGCAATGGCCCATGTACATGGTGGACTATAGCGGCGTGAATGTTCAAGTTCCTGGCAAAGTCAAATACTAATAAACTTTACTGAAGACTTCTACCATTAAGggaccttttttaaaaaaacctGACATTTCTGAATGCTAGAATCAGCTTTCTCCAGAGCTGGGACGGACCTGCGGCTCATGCAAGGAGTCGCCTGTGTGTTTTTTATGGCAGAGATTAAAGCGTGTGAACTGTGGGATGCAGTTGTTTCTGAATGAAGTGCTAATGATGGAGAAAGACAACAGTAAATCAATCTGCCAGTGCTTTATAACATAGAGGAACAGTGCTCACCCTCATCCCAGTCCGAACCAGGATGTTATCATTTTTTatctgtacactacctgacaaaagtcttatcgtcgatcccagttgtaagagcaacaaataataacttgacttttagttcatcatttggaaaagtggcagaaggtagatttttttgataaatcatctgttgaactgcataccaatcatcacaaatactgcagaagacctattgaaacccatATGGACCCAAGgatctcatagaaatcagtcaagtttggtgaaagaaaaatcatgatttggggttacattgagTATGGAGGTGTGCGAAAGATCTGCatgagtgaatggcaacatcaacagcccaaggtatcaggacatttgtgctgcctattacattacaaaccacagaattgcacttcttctcatacttcagcctccacatcaaagtgaaagctaagaaggtcaaggtgctccaggattggccagcccagttaccagacatACACATTATTGaccatgtctggggtaagatgaaggaggaggcattgaagatgaatctaaagaatcttgatgaaccatggagtcctgcaagaacgctttctttgccattccagatgaatttattaatgttatttaaatcattgcagagatttatagatgcagtcgtccaagctcatgggagtcatacacaatattaattatgtttccactgcaccatgtctttatattctatacttcacattatttctgttaagtgacaagacttttgtctaagcaaagtaagaccttactgtcctaatttaataactaaaaatcaaggcatgatcatattattattagtattattgttttgtaaaataagcgtaatctaaaagctttcatataagccacttctgataccaaatgattaactagaagtcaagttattatttgttgttcttaaaacttggatatgtgtgaagacttttgtcaggtagtgtaaaatgCAAAACTTAGTTTTGCCTAAAAAGCTGTCAAAAGTGTTTCAAAAGTATTAAACAATGGTCACATACAGGTATGGAACATCagatgagggtgagtaaataagagGTTGTTTGTAAAAGGTGTAGCCATTATTTGCGTATCAGATGAAATATTGCTTTGCCACCAGGATTTGTAATGTCAGATCCTGGACACAATCATGGTTAAATAACCATCTCATTAAACAGCAGTAAGAATAGCATttgggatttgtttttaatcCAACATATGTCTAATCACTGTTGGGATACACAGCCTTTGTTTGGTGCCGAGAGAGCTCGTACAGTACGTTCATACTGTATACGACTAGTTATCATGCCTTGCGAATgtttgtattgttatttatttatttattgaaatttttaaaatgtttatatgcagGGAATGTAAACTCTGGCATTCAGTTAATTACATAAAGTAGCTTACTGAATGACACGGCTAACGATGCTAAAAACAACGAGCTACTTGTGTAACGTTAATCGGAGAGGAACTTCTGCTTCAGGTTTTAAGCAAGTTGTAAAACCCCTAACACGATAGCACTAACTTATATTCAAttgaaagacttttgttttttttattattttagcattgTAAGTTACTCTTAAGTTCGTTCAATTGAGGCAAAGTGAGGTATTTTAAGGAGAAAacatcatgaatgtattgtttgtaAAGGAAAAGAATACTATAATGTGATTCTGTAATGACTGTCTCTGGAATCGCCAGTATTTATATGCTGTACCTTAATGCCATTTAGGCCtttcaaataaaatgtgttgCCTTGCGTtt
>TCONS_00059612
GATTCGTTCATCAGGGAGACGGAGGATATCAATACCCTTCGAGAATGTGTTCAGATCCTGTTCAACAGCAGATATGCCGAGGCATTAGGCCTGGATCACATGGTTCCTGTGCCATACCGTAAGATCGCTTGTGATCCTGAGGCCGTGGAGATCATTGGGATTCCCGACAAGATTCCCTTCAAGAGGCCATGCACTTACGGTGTGCCTAAACTCAAGCGCATCCTGGAGGAAAGGCACGCCGTCCGCTTCGTTGTCAGAAGGTTTGAGACTCTACCGAGCATGCtttcattctttattttattctattatttaagCGAATGTTGACCCGAGCAGATTCTCTCAATCATGCGCACTATTAAAACTAAAACAGCAGCGGTGTGATTTGTAGTTCTTCCAGTTTCAACATGACGGCGATGTCAGAGATTTAATTACTGATAACCTTTCGTTTTTCACTTGTAATTAACTCTGTGGCTCACCGCAAAATGAATCCCCGATATTGGTAGTAGATATACTGAGTTTTTAATTTGCttcatca
>TCONS_00059613
ATGATCCTTCAGCTGCGAAAGCAAGTCGAGAGCCTGTTCAGCTGCAAGTACAGTGAGGCTCTTGGTCTGCCTGAACCAGCTAAGGTGCCGTACTCCAAGTTTCAGATGTATCCAGATGACCTGTACGTCACGGGGCTGCCTGAAGGCATGACTTTTCGAAGGCCAAACTGTTTTGGAGCAGCTAAACTCAGAAAAATTCTTTCTGCCAGCAGTCAGATTACTTTTGTTATAACGAGgccAGAATTGTTGACGGAACCGGTCAAAAGTGAAAGTGTCTCTAAGACGACCTCTGAATCAGGTAAACAAACGTTTCATTttcttttgtatgtttatttaatttgtttactataa

Function

symbol description
gtf2ird1 Predicted to enable DNA-binding transcription factor activity. Predicted to be active in nucleus. Orthologous to human GTF2IRD1 (GTF2I repeat domain containing 1).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010328-18 Predicted to enable DNA-binding transcription factor activity. Predicted to be active in nucleus. Orthologous to human GTF2IRD1 (GTF2I repeat domain containing 1).

Ensembl:

ensembl_id ENSDARG00000022203

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059611 False 5229 mRNA 0.44 27 59494079 59550943
TCONS_00059612 False 535 lncRNA 0.44 2 59517959 59520951
TCONS_00059613 True 351 mRNA 0.43 3 59534286 59537261

Neighbor

gene id symbol gene type direction distance location
XLOC_030530 NA coding upstream 4458 59489320 ~ 59489621 (+)
XLOC_030529 clip2 coding upstream 13918 59392183 ~ 59480161 (+)
XLOC_030528 rasa4 coding upstream 102998 59278193 ~ 59391081 (+)
XLOC_030527 upk3b coding upstream 229372 59252701 ~ 59264707 (+)
XLOC_030526 prkrip1 coding upstream 245805 59234421 ~ 59248274 (+)
XLOC_030532 dtx2 coding downstream 2693 59553636 ~ 59595597 (+)
XLOC_030533 NA coding downstream 54763 59605706 ~ 60222140 (+)
XLOC_030534 NA coding downstream 83992 59634935 ~ 59635180 (+)
XLOC_030535 CR854831.1 coding downstream 204201 59755144 ~ 59755261 (+)
XLOC_030536 NA coding downstream 674630 60225573 ~ 60226473 (+)
XLOC_030525 NA non-coding upstream 291816 59115869 ~ 59202263 (+)
XLOC_030514 NA non-coding upstream 1072579 58416064 ~ 58421500 (+)
XLOC_030511 FQ378020.1 non-coding upstream 1281795 58212161 ~ 58212284 (+)
XLOC_030510 BX950179.1 non-coding upstream 1456193 58037772 ~ 58037886 (+)
XLOC_030538 NA non-coding downstream 1151482 60702425 ~ 60713740 (+)

Expression


Co-expression Network