RNA id: TCONS_00059616


Basic Information

Item Value
RNA id TCONS_00059616
length 3615
RNA type mRNA
GC content 0.44
exon number 9
gene id XLOC_030532
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 59553636 ~ 59595597 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTTAACTCCGGCTTATTTTAAGATCGGTTGGGGTCATTTCTTAGCAGACACAATGGCAACAGGCTCCAGTTTCCCTTCCGGAGGGAGTGGAACTAGAAACGGACCGTCTTTCGCTTCACCGTCGACTTCGTCTGTCACCTCGTCTGGGGTGCCCGGACAAGCTCAGCCGATGGCGGTGGTTTGGGAATGGCAGGATGATCTGGGCTTCTGGAGGCCCTACACCGGACAGGTGAGCAGCTACATCGAGCAGTGCCTCCAGCACCAGAGAGGGGCAGCGGTCGCCGGGAGCAGCATCTGTCTGGCTCAGGCAGACCCCAGCCTGTCCTCCTACATCATCGACATCCCCAACCTCAAACAGTTCAGACAGGACACTGGAAAGATGCGTGCTGTGCGGAGATCCCTGTTCCCACAGTCCTCTGCTCTGGGCAGTGGTGTTCTTTGGGAGTGGTCTAATGATGAAGGCGGATGGACGGCGTATGAGATACGAACCTCCATCTTGCTGGAGCACAGTTACCAGGCGGGACAGGCCACCGCTGACTTGAGCCCACATGGCTACAACTACATTGTGGACCTCGGAGCTCTCGAACAAGTCAACAAGGCCACCAGCTATAGAAGACGTGTCAGACGGCAAGGCAATGTACCTTATCCCCTCGCCTCTGGGTCGGTTATTCATTCGGGCCCGGCTTGTACCTGTCATCAATGCGTGACCAATAGCAGTACCGCTGGACCCATGTTGAGCCGGTCACGGCATTCCTTCTCTGCGGGACAAGCCATTCGGCCTAGTCTTCAGACCCAGCATGGAAGACTTCCTGTAACCAGCTCTTCATCATCAGCCTACTCTCCCTACCCCAGAAGACCGCTCTCAATGGGAAGCCTCTTATGGAATGGCCCATGGAGCACCCCACCTTCAGTGCCTCATCCTACAGGACCGCCACAGAATTTTAGTCATCATTCAAATGGCTTAAGCATCCCCACCATCCCTCTCCACATGAACGGATCCAGTAGTGTGAACTCGGCACTGGCAGCCCCCGCTCAGAAACCAGAGGAAGTCATTAAGAAATACATGGAGGAAGTGCCTGTGGTCCCAGATGAGGACTGTATTATCTGTATGGAGCGGCTGTCCTGTCCATCTGGTTATGAGGTCCCAGCTGAGTGCTCTCAGTCTCTTCAGCCCAGCACTGTGGGCAAGCTCACCAAATGTGCTCACACCTTCCACATGCTCTGTATGCTGGCCATGTACAACAATGGAACCAAGGATGGGAGTTTGCAGTGTCCCTCATGTAAGACAATCTACGGTGAGAAGACAGGCACTCAACCAAAGGGCAAGATGGAGATCTACAGTATTCCTCAGTCTTTGCCTGGACACCCAGACTGCGGCACGATACAAATCATTTACAACATCCCGCCAGGAATACAGGGTCCTGAACACCCAAACCCGGGACAGCCGTACACATGCAGAGGATTCCCTCGCTTCTGTTTCCTTCCCGACAATGACAAAGGCAGAAAGGTGCTGGAGCTGCTGAAAGTAGCATGGACGCGCCGTCTCATCTTCACCGTGGGCACTTCCAGCACCACAGGCGAGCCCGACACCGTCATATGGAACGAGATCCACCACAAGACTGAGATGATGTCCAATGTGTCTGGCCACGGGTATCCCGACCCAAACTACCTGGACAATGTGCTCTCAGAACTGGCATCGCAGGGCGTAACCGAAGACTGCCTCAAACGAGACGCTCAAGGTTCTGCCATGTGAATAACCGGCTACGGTAGATCTAACTTGACGAAAAGGGAAGAAAACAAAACTAGAGTGTCCGCTGTTCACCAAGAGATTTGGATGTTGATGCCAACGCATCCATTTCCACGCGTACGGCCGAGTCTAGAATATTAACGCACATGTGGGCTTCGTGGTCATCTTTAGTTTCAGCGTATTGTGAGGCAGCTACTGACGGTTCTGCAGGAACGACTCGGGGTTTAATGACCTCTATCGCCAGTTTAGGCATTCATCTCAATATACAGAGCTGTGACGTCCTTCCTCAAATACTACATTACAGTAGAGCAGAGATCATTGTACTGTTGCTGGGAATCAAGCTGACACTATTTTGTTAAAGGGAAAGCTCAACCGCATATGACATTAGCTTTTTTAAAAGCTGTTGGCCATCCAAGATTTTTTTGGGGTTTAATAGAACATTTAATGACTATTTTTTAGCTAAAATTTCAATGCAtgtacaggcaaaacaaaaggACGCTTGCTCTTGTTGCtacattgaggtcttatgaaaAGAAATTAtgaaattgaatattaattacTACATTATTACCTATTATCCAGAGCCGAATGGTTCCCAAAGATCAAGAGAACAATGGATTATGAAATTTGGTtaagcaaaatgtaaaaatttttaaAGAATACTTTTAATGAAGGCTCGTTTTACAGGTTAGTTTATAGGCTTTTAATAgacttattttacaaattttaataggctcattttacaaatttttaattgcCTTACTTTACAAATCACCTATTGGTAAACTTTTCAGTTTTTGAATCCAATTGAACTAATCTCCAGattcagttaattatgctaagctaagctaaatgtgctctcGCCAGACCCCGGCAATCGACTGGATGGATTAAAATATGGTAAAACTCTATggtacttttaaaagtaaaaggggagtgtttctttaatgtttaatagaagtcattatgCAACAGGGCGTTTAGACTCTAGTAATATTATGctataaataatgttcagtttctttcaCAGGCCAGTCAGTTTGCTTTACAAGACCTCTTGTATCTCCAGGAGCCatatgtattcattttgttttgtctgtaagtttacttttattttattttacactccCAAAGTGCTGATATTTTTTGACATGCATCATATGACTCATCAAGGACCACTGGAAAAAACATCATAGATGAtaagagggtgagtaaattaacagtacattttaattttggatgaactatcccttttaaaagcagtaatatacaaaaacataaaattgcACATCAGTGCAAATCATAAATCTTTACTAGTGTTGTAAAACGTACCGCTTCAGAAATAAAAGGCACTTTTACAGAATCTGCAGCTAATTTagttcatatttaaatttttttttttttcagatgtcaGATTTGGTGATTTCTCACTTGCTGCTATTcttttaattaataaacataaGGGACTTGTTTGTTTTCATTGATTCCACAAAATATTGCAACTTTGAATTTACGTTTATTTTATCGACTTAAAAATCCAAGCTTGGCAATACTGCTAGTGCTGGTTTTATTCATAAGTACATCAAGTAAATCAGTGCTGATTTTATTACGAACGGGACCTTGAAAGTACACGTAAAAAATGCAGTCTCGCAGCGTTATTATTGAGTTGCAGTATTACATTGTGCCACAGAGACAATCAGCAGTGTTTGATAAAATTACAGTTCATTACCACACAGCGAGTGTGGAAACATCCATTCATTCCTTCATCTCATATTCCATGGTATGGGATCTTTGGTTTTACAATGTatgcaactgtatatataaatatatattcaactTCTAATCAGCAATAAACACTACTCCATTT

Function

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0016567 protein ubiquitination biological_process
GO:0005654 nucleoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081022-150 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in Notch signaling pathway and protein ubiquitination. Predicted to be located in cytoplasm. Predicted to be active in nucleoplasm. Orthologous to human DTX2 (deltex E3 ubiquitin ligase 2).

Ensembl:

ensembl_id ENSDART00000055350

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00059612 lncRNA upstream 32728 59517959 ~ 59520951 (+) False XLOC_030531
TCONS_00061474 lncRNA upstream 64058 59489320 ~ 59489621 (+) True XLOC_030530
TCONS_00061807 lncRNA upstream 163792 59388293 ~ 59389887 (+) True XLOC_030528
TCONS_00059600 lncRNA upstream 351416 59115869 ~ 59202263 (+) True XLOC_030525
TCONS_00061473 lncRNA upstream 1132179 58417294 ~ 58421500 (+) True XLOC_030514
TCONS_00059619 lncRNA downstream 10116 59605706 ~ 59788523 (+) False XLOC_030533
TCONS_00059618 lncRNA downstream 10160 59605750 ~ 59776373 (+) False XLOC_030533
TCONS_00061808 lncRNA downstream 10398 59605988 ~ 59651709 (+) False XLOC_030533
TCONS_00061809 lncRNA downstream 10540 59606130 ~ 59686252 (+) False XLOC_030533
TCONS_00061475 lncRNA downstream 39345 59634935 ~ 59635180 (+) True XLOC_030534
TCONS_00059611 mRNA upstream 2736 59494079 ~ 59550943 (+) False XLOC_030531
TCONS_00059613 mRNA upstream 16418 59534286 ~ 59537261 (+) True XLOC_030531
TCONS_00059608 mRNA upstream 73518 59397739 ~ 59480161 (+) False XLOC_030529
TCONS_00059606 mRNA upstream 74025 59392183 ~ 59479654 (+) False XLOC_030529
TCONS_00059622 mRNA downstream 923021 60518611 ~ 60684971 (+) False XLOC_030537
TCONS_00059621 mRNA downstream 923021 60518611 ~ 60684971 (+) False XLOC_030537
TCONS_00059623 mRNA downstream 995206 60590796 ~ 60687619 (+) True XLOC_030537
TCONS_00059625 mRNA downstream 1252233 60847823 ~ 60873092 (+) True XLOC_030541
TCONS_00059626 mRNA downstream 1290513 60886103 ~ 60906496 (+) True XLOC_030542
TCONS_00059609 other upstream 73850 59436500 ~ 59479829 (+) False XLOC_030529
TCONS_00059581 other upstream 1171033 58372223 ~ 58382646 (+) True XLOC_030512
TCONS_00059579 other upstream 1341395 58212161 ~ 58212284 (+) True XLOC_030511
TCONS_00059578 other upstream 1515793 58037772 ~ 58037886 (+) True XLOC_030510
TCONS_00059556 other upstream 3247868 56290135 ~ 56305811 (+) True XLOC_030492
TCONS_00059620 other downstream 159554 59755144 ~ 59755261 (+) True XLOC_030535
TCONS_00059624 other downstream 1180291 60775881 ~ 60775998 (+) True XLOC_030540
TCONS_00059631 other downstream 1664362 61259952 ~ 61260067 (+) True XLOC_030544
TCONS_00059636 other downstream 1755778 61351368 ~ 61351501 (+) False XLOC_030545
TCONS_00059637 other downstream 1756330 61351920 ~ 61351995 (+) False XLOC_030545

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000059_03376423_03402604.mRNA True 1686 mRNA 0.56 8 CI01000059 3376423 ~ 3402604 (+)