RNA id: AMCG00005502


Basic Information

Item Value
RNA id AMCG00005502
length 7516
RNA type mRNA
GC content 0.57
exon number 35
gene id AMCG00005502
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2583399 ~ 2638908 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCGGGCTGCCCATGCTGACCGAGGGAAGATGGACGCCTATGACTTGTTCCGCAGGCTGGGATCCGGAGCCAAGTTTGATTTCAAGAAATTCGGCAAAGATGCGGAGAGGTTTAAGGTGGTGAAGTCCCAGAGACCTGAAGAGAAAGCCTCCTCTGATATCCTGGCCAGCATTGACTTCTTCGGCACGGGGGGCCTTGTCTCTCAGAGCAATGGACGGGGCAAGGTTGGCACAGCGCCCCCCAAAGGCACAGCAACTttgggagaggaagaggaggaggaggaggaggagaggagttCAGACTTGGAACAGGAGATCGAAAGTCATCCACCAGctgggaagaggaagagaactGCTGACAAAccagtgaagaagaagaagaagacaacGAAAAACCAAAGTGCAGATACTGAAGACGCCACTGAGAAGTCCGAGGGTGCCGACAGTGAGGGCATTCAGTGGATGTCTGCGCTGGACAAGAAAGCCAAAGGGTCTTTGGACAAGAGTAAGGACAAGACCTGGAAGAGACTGAAGCATCTGCAGCAGGAGAAGGTCAATAAAATCCGGCACCAGAACAGGATAAACGTCCACGGATCTGACGTCCCCGACCCCATGACCACCTTCGAGCAGATCCAGGAGGAGTACGGCATCGACCCGCGCATCATCCAGAACATCCGCCAGGCCGGCTTCGaagcccccacccccatccaGATGCAGGCCATCCCACTCATGCTGCATAACCGGGAGATCCTGGCGTGTGCGCCCACTGGCTCGGGGAAGACGGTGGCATTCTGCCTGCCCATCCTCGCCGCGCTGCGCAAGCCTGTCAACAAGGGCTTCAGAGCTCTGGTCATCGCACCCACCCGAGAGCTGGCCAGCCAGaCTCATCGGGAGCTGGTGCGGCTGTCCGAGGGCCTGGGCTTCAGGGTGCACATGATCGACAAAGGGGCGGAAGCAGCCAAAAAATTCGGGCccaaatctgccaagaaatacgATATCTTGGTGACGACTCCCAACAGATTAATTTACCTGCTGAATCAAGACCCCCCCTCAGTGGACCTCAGCAGGGTGGAGTGGCTGGTGGTGGACGAGTCGGACAAGCTGTTCGAGGACGGAAAGAGCGGCTTCCGGGAGCAGCTGGCCACTGTGTTCCTGGCCTGCTCCTGCCCGCGTGTGCGCCGGGCCCTGTTCAGCGCCACCTGCGCTCCCGACGTGGAGCAGTGGTGCCGGCTCAACCTGGACAGCCTGGTCTCCGTCAACATCGGGCAGAGGAACTCCGCTGCCGACACAGTGGAGCAGGAGCTGCTGTTCGTGGGCACTGAGAGCGGGAAGCTGGTGGCGATGAGGGACCTGATCAAGAAGGGTTTCCTCCCCCCGGTGCTGGTGTTCGTGCAGTCGATCGAGCGTGCCCGGGAGCTGTTCCACGAGCTGGTCTACGAAGGGATCAACGTTGACGTCATCCATGCGGAGCGCACTCAGCTGCAGAGAGACAACGTGGTGAGCAGCTTCCGCTCCGGGAAGATCTGGGTCCTgatctgcactgcactgctggCCAGAGGCATCGACTTCAAGGGCGTCAATCTGGTGATCAATTACGACTTCCCCACCAGCTCTGTGGAGTACATCCATCGCATTGGTCGCACCGGCAGAGCAGGGCATCGTGGGAAAGCCATTACTTTATTCACAGAGGATGACAAGCCCTTGTTACGCAGTATCGCCAACGTCATCAAACAGGCTGGCTGCCCGGTCCCTGAATATATGATTGGATTCAAGAAAATACACAGCCAAGAGAGAAGGAAGATGATGAAGAAGCCCCCCAGAAGAGCCACCATCAGGACCACCCCCCGCTTCCTGCTGAAGAAAGGTCACGGCAAGGGTAAAAGCTTCATGTATCCAGTCGGAGGGGGACTCGGGCCTCCACAAGGGATGATGCCAATGCAACctcaacaacagcaacagggcTTCCCTATGGTGCAAGTCATGCAGCCCAACATGCAGGGCATGATGGGAATGAACTTTGGTGGCCAGTTGCCACCTGGCGCCATGCCGATGCAGGGTGGCATGTCAATGGGAGCCATGCAGGCCCCTGGGATGCAGTTCATGGGCCAGCCGCAGTACATGGGCATGAGAGGACCGGGCCCGCAGAAGCGtctggagcagcagcagaggATGCTGGAGGAGGACAGGAAGCGGCGGCAGTTCGAGGAGCAGAAACAGAAGCTGCGTCTGCTCAGCAGTGTCAAGCCCAAGATGGGTGAGAAGAGCAGGGATGATGCTCTGGAGGCCATCAAAGGGAACCTGGACGGCTTCAGTAGGGACGCTAAGATGCACCCCACCCCCGCCTCGCACCCCAAAAAGCCAGACTCATCGCCATCACACTCTTCtgtctcctccctctccttcccccctGCCTTCCGCGAGGACGATGACGAATTTAGCGACTTTATGCAAGGTCCCGCTGAGCCCCCTgcctccttcccctcctccacccccacctCTTTCCCAGCTGTCCATCGCGCTCCCCCCCAGCTTCAGGCGGGACGGGTGCACCCCCCCTCAGAGCAGCCTCACCCCCCTGTGCCCCCCCAGTCTGTCCTCTGCATTGTGCCAATCCCTTCAGCCACCCAGCAGCCCACTGTCACTGCCTCCAGCTCCCAATCTACTGCCTTCAAAGGCCCATCACTGGAAGAGAAACTTTTTTCCTCCTGCGATTTAACCTCAGACAGCCGGGCCCAGCATAGTTTTAAGTCCCGGCAGCCCTTGGCAGAGATGGCACCTAGGTCTCGGGTGTTGGCCCAGTTTCAGCCCAGCACCAGAGCCCGAAACTGGGGCTTCCCCAACAGCAGCCTGAGCGGGGCCTTCAGCGTTGAAACGCCAGGCCAGTCCTCGCAACCTCCACCAACGCAGGCCCCTAACAGCGCCCCGCCGGCCGCTCAGGACAGCGGTGTTGGGGTGTATCCTCAACAAGAGCATATCCAGCCCATGATGCCTGCATGGCTCTACAACGACAGCCTCGTTCCAGACCTTTTCAAGAAAGTCCTGGAGATCACCATGACTCCCTCAGGCATCGACACGGCCAAGCTCTACCCCATCCTGATGTCATCGGGGCTGCCCAGGGAGGCGCTCGGCCAAATCTGGGCCCTGGCCAACCGCACGACCCCCGGGAAGCTGACCAAGGAAGAACTATACACCGTGCTGTCTATGATTGGCGTGACTCAGagcGGTCTCCCAGCAATGAACATAGATGTGCTGAGCCAGTTCCCCTCCCCCCCTGTGCCCAACCTGCCTGGCCTGGCCATGGCGATGCCCTCGGTCCTGCCCCATCAGCCCATGATGTCGGTGCCCTCAGTCCCCCAGCCCCCTGTCTCCATGGCCATGACTTCTGTCCCACCAGTGCTGGGCATGACCACCCAGGGCTCCAGCACACAGCCGCCCACTGGGTTCATGCCAACCTTCCCTCCTACCACACAGGCGCAGAAACCCGACGATGATGACTTCCAGGATTTCCAGGAAGCGCCCAAGGCGGGGTCGGCGCAGGACTCCTTCACCGACTTCCAGGGGGAGTCAGCTGGGGGGTTCCCCGGCACGCCCAGCTCCCAGCCCCCGAGCAACGCCCCGGCCTTGTTGACTCCTGTGTCTGGAATGGCGTCGTCTTCGGCCTCTGATAAGTACGCAGTGTTCAAGCAGCTCTCGCCCTCTGATTTAAAACCCATAGgGGAAGGATTTGCAGATTTCAAGTCCACCAGTGCCGACGATGGCTTCACAGACTTTAAGACGGCCGACAGCGTTTCCCCATTAGACTCCTCAGACCCAGCCAAAATATTCCAGCCTGCTTTCCCATCTCCTTTCCTGCCATCACAGCCtctacaacagcaacagcaactgcAACCACAGCCCAAACCACAACCCCAGCAATACCACACCGCCCCTCCCTCTCAGCCTAAAAACCCCCTCAACATGGCCGACCTCAATCTGTTTTCTTCTCTGGCTCCAGCCGCCCCCATCTCCGACACCAAACTTCCGCCTTTCCCCTCGGCCCCCAGCTCTCTAATAGCCCCCCCGACGGGACAGAAGATCCTGGCTGGAGTGGCGGAAGATTTTGGGGACTTTGCCTTGTTCGGGACCTCCACCACCTCCGCCCCCACTCCTGCCGCTGTCACTTCTGTGGCCCCGGTGTCTGTGGCTGCAGGTAGTGCTGGGGTGCTGGGCTTGGTGCAGGATGACTTTGCAGACTTCATGGCCTTCGGAGGCTCGGGGGAGCCCAAGCCCGAGCCCAAGGACCGAGAGGGGAACGCGGCCGGGGGTGTCCTCGCGGAGATCCCGCCCCCCCCGCAGCTGCAGCAGCCGCCCCGACATGCCCAGCCGCCCTGCGACAAGTACGATGTTTTCAAGCAGCTGTCTCTGGAAGGCTCTCTCGGGTTCGAGGACACCAAGGAGAGCGGGGTGGCAGCCTTGGGGGGGTCCTACGCGTCCCTCAAGGGCGACGCGGATGACTTTGCCGACTTCCAGTCCTCCAGGTTCTCCACGGCTCTGGGGGCCTCCGAGAGGAGCCTGGTGGACAAGTTGGCCGCCTTCAAGCAGGCCAAGGAGGACTCGGCCTCGGTCAAGTCCCTAGACCTGCCCTCCATCGGGGGCAGCAGCGTGGGCAAGGACGATTCGGAGGACGCCCTGTCCGTGCAGCTGGACATGAAGCTGTCCGACGTCGGGGGGGACCTGAAGCACGTGATGTCGGACAGCTCCCTCGACCTGCCCGGCCTCCCCGGCCACCACCCCCCCGCCGCAGAGGGGGATGACTTGAAATTTGACCCCTTCGGCACCTTCAGCGGCGGGTCGGCCGTCAGCAGCCTGGCCAGCTACGATTGGTCCGACCTGGAGGAGTTCTCGGCCGCTCAGGGTAAGAAGCCGCAGGCGGGCGTGCTGGGTTTGGAGGTGGGCAGCCGGCCCTCCTCGTCCACGCTGCAGAAGAAGGAGACTTCCTTCGGCAGCTCTGAGAACATCACCCTGACCACCGTGGCCAAGGTGACCACTTTCCACCCGGAGGAGGCCTCCTCTGTTGAGAACCTCGCCGGCTCCAGTGACCAAGCCGCCGAAGAGGACGATTTTGGGGACTTTGCCAGCACCATATCGGAGAAGTCCGACTCGCCGCCCACCACGGCAGACCCCGGCTCCGATAGCCTGCCTGGTGAAGCTGCAGATGACTTCGGGGCCTTCCAGGGGGACAAGCCCAAGTTCGGCAAGTTTGATTTCCTCAAAGCCAGCTCCCAGGCCAAGGTGAAGTCCAGCGAGGAGATGATCAAAAGCGAACTGGCCACCTTTGACTTGTCTGTGCAAGGCTCCCACAAGAGGAGCCACAGCCTTGGTGACAAGGAGATCGGGCGCTCCACCCCCTCTCCTGCCCCCGAGCTTCCCTTCCGTGATCGCTCCAACACGCTGAGTGAGCAGCCCGCCCTGCCCGTCATCAGGGACAAATACAAGGACCTGACCGGGGAGGTGGAGGAAAGCGAACGCTATGCTTACGAGTGGCAGCGATGTCTGGAGAGCGCACTGCAGGTCATCAATAAGGCCAACAATACCCTGAACGGGATCAGCAGCTCTGCCGTCTGCACCGAGGTCATCCAGTCTGCCCAGGGCATGGAGTACCTGCTGGGGGTGGTGGAGGTGTACAGGGTGACCCGGCGGGTGGAGCTGGGGATCAAGGCCACGGCCGTGTGCTCAGAGaaactgcagcagctcctcaaGGACATCACCCGCGTCTGGAACAACCTGATGGGCTTCATGTCCCTCGCCAACCTATCGCCAGACGAGAGCTCCCTGGATTTCTCATCCTGTATCCTGAGGCACGGCATCAAGAACGCCAAGGAGCTGGCCTGTGGGGTGTGCCTGCTCAACGTGGACTCCAGGAGCAAGGCTTTCAACTCGGAAACGGACAACTTCAAACTGATGTACGGAGGCCACCAGTACCACGCCAGCTGTGCTAACTTCTGGATCAACTGTGTGGAGCCCAAACCCCCGGGCCTTATTCTGCCTGACCTGCTCTGAGGTGCCCCTGCCATGGCATCCGACGGAGGGTAAACAGGATGCAAGCTGGCTGGTCTAGACCTGCTGAGAGACTCGCTGAAAGCATGTTAATACGAGCGCCCTGTCATTCACCCAGAATAGCTGCTCTTTCATTTACCTCCCAGAGCTTTTATCACCGGACTAATTACACCATTCTGTGGGAGTCCGCGAGCCATTAGCATGGGCTGAGCAGTTGGAAAGAAATggttatgtgtatattttttgttctttttctttcttcgctggcattttaaaagcacaagcTTCCGTGTCGGATATCGAGGGATATTTATTCGAAATTAATGTCTTTGTTTATAGCGGTGTTAAGGTGTTCAGCCGTGTGTTGGGAATTCATCCTCTAGGTGGGATGGGAAGGGTAACAATCATGGGTCCACTGAATATCAACAAAGCTGTCCAATTTGTTCATTTAAGATCAAGGTTTCTCATGACGTGTATCcccaataataatataataaagccGAGTTGTGGAGTTCGCCCCTTAGAGTATACCGTGTTTTCCCTCCAAACGAATGTGCTCTTCAGGATCTGATGTTGGCTGCAGTGTATCTCTGAACCTCCTGGGAGTTACAGTGAAGAGGGAGAAATAACTTGATTAGAGCGAAATCAATGCACGgttaaagaaaatgttactGATGCACTTGGGTCTTAAGGTTTAAACTTAGAGGGACTTGTTACAGAAAGATCAGATGcttcaaaagtttattttttctccagcttttatttcttttttaagtttgcttCGCTGTGTTGGGGAGTAGCTCGCTACAGGTGGCAACGCTACTGATGCTAAACGCTAGTAATCAGCTATTATCTTGATGagcacaatgttattttagataTAAATGTGAACATTGCTGAGAGAGGTCTTCTCTTTGCTTTTCACTAAATGAATCAGTCAGGCCAATCTATTATCCAGACTTTATgatcttaaaacacaaaaaaacatattgtaaaagCCATATAAGCAatttactatatttaattttgcaggTTTTGTGTTAAACTAGAGGtgcacaaaaagcagaacactgATTGGGTTATCCATCACCGAGCAAATAACCCGACCTCATGATGGGCAACTCAAtcagcaaatattttaaatgttttggaaggTAGGTACCAGATGCTGCCCAGCTCTGGTGCAGAAGTCGTCAATgcaaaaaattaaattcaaacatATCTTTTCAATAAACTAAGAGAACAATGTTTTCATCTAGTTCAACACAAGTTGGCCTGCCAGCACAGCCTGCAAACTTGCTCTCAGATTCACACTTTGAAATGTTATGTCGTCTCTCTGCAGATGAAGCTGTGAGACAAGGAAGTACACAATTGCATTTGAGGTGTCTTTAACATTTCACCACTTCTGTCACCAAGTTTTGTCAGAGTCTTCGGGTATGGGGTATTACAAAGTCAGAACCCTGCAAATGCACGTcaacatt

Function

GO: NA

KEGG:

id description
K25219 SYNRG; synergin gamma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191902 lncRNA upstream 260054 2255365 ~ 2323345 (+) True G152397
TU191834 lncRNA upstream 636599 1929455 ~ 1946800 (+) False AMCG00005429
TU191670 lncRNA upstream 1067447 1509502 ~ 1515952 (+) False AMCG00005434
TU191632 lncRNA upstream 1121460 1461724 ~ 1461939 (+) True G152198
TU191630 lncRNA upstream 1124652 1458154 ~ 1458747 (+) True G152196
TU192219 lncRNA downstream 433042 3071950 ~ 3090655 (+) True G152644
TU192220 lncRNA downstream 433042 3071950 ~ 3090655 (+) False G152644
TU192232 lncRNA downstream 544913 3183821 ~ 3185332 (+) False G152655
TU192233 lncRNA downstream 545847 3184755 ~ 3186988 (+) True G152655
TU192234 lncRNA downstream 545847 3184755 ~ 3185332 (+) False G152655
AMCG00005503 mRNA upstream 13689 2566389 ~ 2569710 (+) True AMCG00005503
AMCG00005504 mRNA upstream 17899 2546393 ~ 2565500 (+) True AMCG00005504
AMCG00005484 mRNA upstream 62445 2512222 ~ 2520954 (+) True AMCG00005484
AMCG00005481 mRNA upstream 72732 2503936 ~ 2510667 (+) False AMCG00005481
AMCG00005483 mRNA upstream 81672 2495360 ~ 2501727 (+) True AMCG00005483
AMCG00005493 mRNA downstream 195589 2834497 ~ 2844701 (+) True AMCG00005493
AMCG00005494 mRNA downstream 211184 2850092 ~ 2857112 (+) True AMCG00005494
AMCG00005492 mRNA downstream 228063 2866971 ~ 2871873 (+) True AMCG00005492
AMCG00005490 mRNA downstream 254397 2893305 ~ 2896669 (+) True AMCG00005490
AMCG00005509 mRNA downstream 512773 3151681 ~ 3171935 (+) True AMCG00005509
TU192049 other upstream 72723 2503910 ~ 2510676 (+) True AMCG00005481
TU192048 other upstream 72723 2503993 ~ 2510676 (+) False AMCG00005481
TU191823 other upstream 779496 1799811 ~ 1803903 (+) True G152337
TU191729 other upstream 834465 1745960 ~ 1748934 (+) True G152267
TU191589 other upstream 1204097 1376468 ~ 1379302 (+) True AMCG00005418
TU192155 other downstream 206309 2845217 ~ 2849608 (+) True G152588
TU192254 other downstream 627834 3266742 ~ 3270839 (+) False AMCG00005498
TU192255 other downstream 627834 3266742 ~ 3270839 (+) False AMCG00005498
TU192563 other downstream 1644152 4283060 ~ 4284963 (+) False AMCG00005538
TU192612 other downstream 1921305 4560213 ~ 4561484 (+) False AMCG00005546

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000053_02645463_02689522.mRNA True 4209 mRNA 0.53 22 CI01000053 2645463 ~ 2689522 (+)