RNA id: AMCG00005504


Basic Information

Item Value
RNA id AMCG00005504
length 2047
RNA type mRNA
GC content 0.61
exon number 9
gene id AMCG00005504
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2546393 ~ 2565500 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCTCGGTCAACACGCCCGCTCTCCGCCATTTGCATGCGGACCCGCCCCCAGCCCCTCCATTAGCATATTTTATATCGCCTTCCCTGGGCATCATGGCCAATTAAACCATTCTGCGCTGCAGGGAGACGCACCAGCAGCTTCTCCGAGCAGGTGTCTGACGGGATCCGCACACGACGCatttcccttctttctttccttcttctttctttttcccttcttttatTGATGTTTGCGAACATGGTGTCCAAGTTGACCACTCTGCAGCAGGAACTTCTAAGCGCCTTGCTCAGTTCTGGAGTTACCAAAGACGTGCTGATCCAAGCCCTGGATGACATGGACCCCAGCCCGGGGGGCTTCGGGATTAAGCTGGAGACCCTGCAGATGTCGCCGCCCAGCGCCAAGATGAGCGGCGGCGATGGGGACCCCAAGCCCGTCTTCCACACGCTCACCAACGGGCACGGCAAGGGCGCCAAGCTGTCCGGGGACGAGGGCTCGGAGGACGGGGACGACTTCGACACTCCGCCGatcctgaaggagctgcagtcGCTCAACACGGAGGAGGCGGCGGAGCAGAGGGCGGAGGTGGACCGCATGCTGAACGAGGACCCGTGGCGAGCGGCGCGGATGATCAAGGGCTACATGCAGCAGCACAACATCCCGCAGCGGGAGGTGGTGGACGTCACCGGCCTCAACCAGTCGCACCTGTCGCAGCACCTGAACAAGGGCACGCCCATGAAGACGCAGAAGCGGGCGGCGCTCTACACCTGGTACGTCAGGAAGCAGCGAGAGATCCTGCGACAGTTCAACCAGGCAGTGCAAGGGTCTGGCAGCAATATGACAGACAAAGGCAATCAGGATcaggtgctgttttttttcccagagtTCAGTCAGCCAGGGCAGGGGCCGGCCGGGGGAGCGCCGGACGAGGTGGGCGCCGAACCCGCTTGCAAGAAAATGAGGCGCAACCGGTTCAAATGGGGGCCTGCTTCCCAACAGATCCTCTACCAGGCCTATGAGAGGCAGAAAAACCCCAgcaaagaggagagggaggccctGGTGGAGGAGTGCAACAGAGCCGAGTGTCTCCAGAGGGGCGTCTCTCCCTCGAAGGCCCACGGTCTGGGCTCGAACCTGGTCACGGAGGTGCGGGTCTACAACTGGTTTGCCAACCGACGAAAAGAAGAAGCCTTCCGACAGAAACTGGCAATGGACGCCTACTCCGGAGCCCCAACCCACGGCATGAACCCCCTCCTGTCTCACAGCTCGCCGCACCAGCCCCAGACCAGCGCTTCCCCACCCAGTAAGATGCCAGGAGTCAGATACAGCCAACAGGGAGCCAGCGAGGTCACTTCCTCCACAACCATCAGTCACCACAGCAACAACGCCATGGCCAATAGCCAGACGGTTTTACAGCAGGTGTCCCCCGGCGGCCTGGACCCCAGCCACAGCCTGCTGTCACCTGACGCCAAAATGATCTCGGTGTCAGGAGGTGGGTTGCCCCCTGTCAGCACCCTGACCAACATCCACAGCCTGTCGCAGTCCTCGCACCACGGACACCAGCAGACACAGAACCTCATCATGGCGCCGCTGTCCGGAGTCATGGCCATCGCACAGAGTCTGAACTCGTCGCAGGCGCAGAGCGTGCCGGTGATCAACAGCGTGGCGGGCAGCCTGGCCGCCCTGCAGCCTGTGCAGTTCCCCCAGCAGCTGCACAGCCCCCACCAGCAGAGTCTGATGCAGCAGTCGCCCGGACACATGGGCCAGCAGCCCTTCATGGCCACCGTCACACAGCTGCAGAACTCGCACATGTACTCACACAAACAGGAGCCCCCCCAGTACTCCCACCCCTCGAGGTTCCCCTCGGCCATGGTGGTCACCGACGCCAGCAGCATCAGCACACTCACCTCCATGCCATCCAGCAAACAGGTGACTTGTACAAGGGTGGCGGAGGGGGGGCGCTGGGTTGACGGTCTGAGAACGGGAGAACAGGAAATGCTCTCCCAGCTTAATCAAACCCCTGATAGGGCATTGCGCTGGGCTGACTag

Function

GO: NA

KEGG:

id description
K08034 TCF2, HNF1B; transcription factor 2, hepatocyte nuclear factor 1-beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191902 lncRNA upstream 223048 2255365 ~ 2323345 (+) True G152397
TU191834 lncRNA upstream 599593 1929455 ~ 1946800 (+) False AMCG00005429
TU191670 lncRNA upstream 1030441 1509502 ~ 1515952 (+) False AMCG00005434
TU191632 lncRNA upstream 1084454 1461724 ~ 1461939 (+) True G152198
TU191630 lncRNA upstream 1087646 1458154 ~ 1458747 (+) True G152196
TU192219 lncRNA downstream 506450 3071950 ~ 3090655 (+) True G152644
TU192220 lncRNA downstream 506450 3071950 ~ 3090655 (+) False G152644
TU192232 lncRNA downstream 618321 3183821 ~ 3185332 (+) False G152655
TU192233 lncRNA downstream 619255 3184755 ~ 3186988 (+) True G152655
TU192234 lncRNA downstream 619255 3184755 ~ 3185332 (+) False G152655
AMCG00005484 mRNA upstream 25439 2512222 ~ 2520954 (+) True AMCG00005484
AMCG00005481 mRNA upstream 35726 2503936 ~ 2510667 (+) False AMCG00005481
AMCG00005483 mRNA upstream 44666 2495360 ~ 2501727 (+) True AMCG00005483
AMCG00005482 mRNA upstream 52156 2487213 ~ 2494237 (+) True AMCG00005482
AMCG00005512 mRNA upstream 61941 2480675 ~ 2484452 (+) True AMCG00005512
AMCG00005503 mRNA downstream 889 2566389 ~ 2569710 (+) True AMCG00005503
AMCG00005502 mRNA downstream 17899 2583399 ~ 2638908 (+) True AMCG00005502
AMCG00005493 mRNA downstream 268997 2834497 ~ 2844701 (+) True AMCG00005493
AMCG00005494 mRNA downstream 284592 2850092 ~ 2857112 (+) True AMCG00005494
AMCG00005492 mRNA downstream 301471 2866971 ~ 2871873 (+) True AMCG00005492
TU192049 other upstream 35717 2503910 ~ 2510676 (+) True AMCG00005481
TU192048 other upstream 35717 2503993 ~ 2510676 (+) False AMCG00005481
TU191823 other upstream 742490 1799811 ~ 1803903 (+) True G152337
TU191729 other upstream 797459 1745960 ~ 1748934 (+) True G152267
TU191589 other upstream 1167091 1376468 ~ 1379302 (+) True AMCG00005418
TU192155 other downstream 279717 2845217 ~ 2849608 (+) True G152588
TU192254 other downstream 701242 3266742 ~ 3270839 (+) False AMCG00005498
TU192255 other downstream 701242 3266742 ~ 3270839 (+) False AMCG00005498
TU192563 other downstream 1717560 4283060 ~ 4284963 (+) False AMCG00005538
TU192612 other downstream 1994713 4560213 ~ 4561484 (+) False AMCG00005546

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000041_00491606_00496881.mRNA True 3328 mRNA 0.43 5 CI01000041 491486 ~ 498751 (-)