RNA id: AMCG00005593


Basic Information

Item Value
RNA id AMCG00005593
length 393
RNA type mRNA
GC content 0.54
exon number 5
gene id AMCG00005593
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5577417 ~ 5593182 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAAACGCGCACATCAAGTCGGCACCCGAAGTGCTCGATCACTTCGGGGTGAATGAAAACACTGGACTGACCCTGGAGCAAGTGAAAGCCCATTTTGACAAATACGGACCCAACGATGTCCACCTGGCGGCAGGACGCATCCTTAGCACCGCGGAAAAGGCGCAGATTTCTGGCGACGgtCTGTTTGGTGACCGTGCGTCAGTCTTGACCAGGTATTTCTCCAGCATTGCGAGCCCGGGCGTGTTTGAGCACGTGCAGATGCGCTCCACAGAGCGGCTGTGGAACAGGGTGTCCAAAATTGATCTTGAAGTGGGTATTAGCCCGTTACAGAGGGTTACGGACCTAATGGGTATCGAACTCCTCATCTCTACCAGACAGCTTCTGATCTGA

Function

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005388 calcium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192858 lncRNA upstream 132160 5444379 ~ 5445257 (+) True G153154
TU192816 lncRNA upstream 253494 5321060 ~ 5323923 (+) True G153118
TU192811 lncRNA upstream 268326 5307945 ~ 5309091 (+) True G153113
TU192775 lncRNA upstream 375882 5195788 ~ 5201535 (+) True G153082
TU192772 lncRNA upstream 386621 5190527 ~ 5190796 (+) True G153080
TU193001 lncRNA downstream 207466 5800648 ~ 5800892 (+) True G153271
TU193006 lncRNA downstream 323653 5916835 ~ 5955451 (+) True G153274
TU193057 lncRNA downstream 454948 6048130 ~ 6048438 (+) True G153312
TU193099 lncRNA downstream 638977 6232159 ~ 6234047 (+) True G153348
TU193133 lncRNA downstream 689806 6282988 ~ 6331371 (+) True G153381
AMCG00005622 mRNA upstream 30388 5514040 ~ 5547029 (+) True AMCG00005622
AMCG00005623 mRNA upstream 69267 5493184 ~ 5508150 (+) True AMCG00005623
AMCG00005621 mRNA upstream 87847 5479508 ~ 5489570 (+) True AMCG00005621
AMCG00005624 mRNA upstream 101770 5466148 ~ 5475647 (+) True AMCG00005624
AMCG00005613 mRNA upstream 216494 5356203 ~ 5360923 (+) True AMCG00005613
AMCG00005591 mRNA downstream 1989 5595171 ~ 5604521 (+) True AMCG00005591
AMCG00005592 mRNA downstream 19462 5612644 ~ 5617109 (+) True AMCG00005592
AMCG00005590 mRNA downstream 33524 5626706 ~ 5639936 (+) True AMCG00005590
AMCG00005589 mRNA downstream 55279 5648461 ~ 5666868 (+) True AMCG00005589
AMCG00005603 mRNA downstream 144608 5737790 ~ 5744821 (+) True AMCG00005603
TU192781 other upstream 355502 5214823 ~ 5221915 (+) False AMCG00005583
TU192612 other upstream 1015933 4560213 ~ 4561484 (+) False AMCG00005546
TU192563 other upstream 1292454 4283060 ~ 4284963 (+) False AMCG00005538
TU192254 other upstream 2306578 3266742 ~ 3270839 (+) False AMCG00005498
TU193227 other downstream 894536 6487718 ~ 6488620 (+) True AMCG00005667
TU193523 other downstream 1667495 7260677 ~ 7265971 (+) True G153675
TU193739 other downstream 2622708 8215890 ~ 8230590 (+) False G153815
TU193852 other downstream 2911013 8504195 ~ 8507075 (+) False AMCG00005720
TU194290 other downstream 3842718 9435900 ~ 9438269 (+) True G154251

Expression Profile