RNA id: AMCG00005623


Basic Information

Item Value
RNA id AMCG00005623
length 5185
RNA type mRNA
GC content 0.55
exon number 25
gene id AMCG00005623
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5493184 ~ 5508150 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGGCAGGcacaaaaaacaccaacaaccaCAGCACTAGAGGGCGCAACGTGGGCAGTAAACCCTACGAGCGTTTTCCTCATCCCATCCCGGATAGAGACGAGGGCGAAGTGCACTGCCAGATCCTCTCCCCGGCTCGGCTGGGCTCGGCTGGGCTCGGCTCCCTCCGTCCTCTCCTCCTCCCGCTGCTCAACCCGTCTCCTCTCCGGCACCAAGATATCGCGAGAGTTGCGCAGAGCCCGGACCCAACATGGCGGAAGGAGGTGGCCAAGCTGCAGAAGCACCTGGCCCTTCTACGCCAGGAGTACGTGAAGATGCAGCAGAAGCTGGCCGAGACGGAGAAGCGCTGTGCCATGTTGGCGGTCCAGGCCAACCAGGAAAGCACCAGCGACTCCTTCATCAGCCGTCTGCTGGCCATCGTGGCCGAGCTGTACCAGCAGGACCAGTACAGTGACTTGAAGGTAAAAGTTGGTGGGAAGACCTACAGCGCTCATAAGTTTGTACTGGCAGCGCGCAGTGAGGTCTGGAGTCTGGCCAACCTTGCATCCACTACAGAACTGGACTTGTCTGATGCCAAGCCGGAAGTTGCCATGGCGATGCTGCGCTGGGCATACACAGACGAGCTGGAGCTTAAGGAGGACGATGTCTTCCTGACTGATCTCATGAAACTGGCCAACCGCTTCCAGCTGCAGCTCCTGCGAGAGAGGTGTGAGAAGGGCGTGATGTCCTCGGTCAATGTGAGGAACTGTATTCGGTTTTACCAGACCGCGGAGGAGCTCAGTGCCGCCACACTGATGAACTATTGTGCCGAGATCATTGCCAGCCACTGGGATGACCTGAGGAAGGAGGACTTCAGCAGCATGAGCGCACAGCTGCTGTACAAGATGATTAAATCCAAAACCGAGTTCCCCTTACACAAAGCCATTAAAGTGGAGCGGGAGGATGTGGTATTCCTCTACCTCATCGAGATGGATTCACAGcTGCCTGGGAAGCTGAACGACCTGGACAACAACGGGGACCTGGCCCTGGACCTGGCTCTGTCTCGTAGGCTGGAGAGCATTGCCACCACGCTGGTCAACAACAAGGCTGACGTGGACATGGTGGACCAGAGCGGCTGGAGCCTGCTTCACAAGGCCATCCAGAGAGGGGATGAGTTTGCCTCCACCTTCCTGATCCGGCACTCGGCCCAGGTGAATGCTGCCACGGTGGGTGCTGTCGAGACCCCTCTGCACCTGGTCTGCTCCTTCAGCCCAAAAAAGCACTCGGCGGAGGCAGTGGTGTCCGGGAACGAGCCTGTCTTCAACCAGCTCCTGCAGTGCAAACAGTTGGATCTGGAGCTGAAGGACCACGAGGGCAGCACGGCTCTGTGGCTGGCCCTGCAGTACATCACCGTCTCCTCGGACCAGACGGTCAACCCCTTCGAGGACGACGTGCCCGTGGTCAACGGCACCTCCTTCGATGAGAACAGCTTGGCGGCACGGCTCATCCAGCACGGCAGCGACCCCAACGCCCCAGACAGCACCACAGGGAACTGCCTTTTGCAGAGGGCTGCCGGCGCTGGCAACGAGGCGGCCGCGCTCTTCCTCGCCACGCATGGGGCAAAGGTCAACCACAGCAACAAATGGGGGGAGACGCCGCTGCACACGGCCTGTCGGAATGGCCTGGCCAACCTGACTGCGGAGCTGCTGCAACAGGGCGCCAACCCCAACCTGCAGACCAAGCAGGCCCTGGAGGAGGACCGGGGCCAGGGTGTCTACCTGCAGAGCCCCCTGCACATGGCCATAGCCTACGACCACCCCGACGTGGTGTCTGTCATCTTGGAGCAGAAAGCCAACGCGCTCCACGCCACCAACAACCTGCagatcatcccagacttcagcCTCAAGGACTCTATGGATCAGACAGTCCTTGGCCTTGCCCTCTGGACAGGCATGCACACAATAGCTGCCCAGCTCCTCGGCTCTGGCGCTGCCATCAACGATACCATGCCGAGCGGGCACACCCTGCTGCACATGGCCATCCAGAGACAGGACAGCAAGAGCGCCCTCTTCCTGCTGGAGCACCAGGCAGACATCAACGTCAGGACTCGCGATGGAGAGTCGGCTCTTCAACTGGCCATCAGCAACCAGCTCCCCCTGGTGGTGGACGCCATCTGCACACGGGGGGCCGACATGTCCGTGGTGGACGAGAAGGGGAACCCCCCGCTTTGGCTGGCCCTGGAGAAAGGCCTGGAGGACATCGCCTCCACCCTGGTGAGGCATGGCTGCGACGCCACTTGCTGGAACTCAGGCCCAGGCGGCTGTCAGCAGACCCTCCTGCACCGGGCTGTGGACGAGAACAATGAGAACATGTCCTGCTTCCTCATCCGCAGTGGCTGTGACGTGAACAGCCCCAGGAAGCCGGGGCCCAACGGAGAGGGGGATGAGGAGGCCCACGATGGGCAGACGCCCCTGCACCTGGCAGCGAGCTGGGGGCTGGAGGAAGTGGTGCAGTGCCTTCTGGAGTTCGGGGCCAACGTCAACGCCCAGGATGCGGAGGGCAGAGCTCCGGTCCACGTGGCCATCAGCAACCAGCACAACGTCATCATCCAGCTGCTCATCTCCCACCCCGAGATCCGCCTGAATGTGCGGGATCGCCAGGGCATGACCCCCTTCGCCTGCGCCATGACCCACAAGAACAACAAGGCCGCCGAGGCTATCCTGAAGAGGGAGCCGGGAGCTGCCGAGCAGGTGGACAACAAGGGGCGGAACTTCCTCCACGTGGCTGTGCAGAACTCGGACATCGAGAGCGTGCTGTTCCTCATCAGCGTCCAGGCCAACGTCAACTCGCGTGTTCAGGACGCCGCCAAACTCACCCCCCTGCACCTGGCTGTGCAGGCTGGCTCCGAGATCATCGTCCGCAACCTGCTGCTGGCTGGGGCCAAAGTCAACGAGCTGACCAAACACCGGCAGACCGCCCTGCACTTGGCTGCCCAGCAGGACCTGCCCACCATCTGCTCCGTGCTCTTGGAGAATGGGGTGGACTTCGCCGCCGTGGACGAGAACGGCAATAACGCTCTCCACCTCGCTGTGATGCATGGGCGCCTGAACAATGTGAGAGCCCTCCTCACAGAGTCCAACATCGACGCGGAGGCCTTCAACCTCAGGGGTCAGTCTCCAATGCACATCCTGGGGCAGTATGGGAAAGAGAACGCGGCCGCCATTTTCGAGCTGTTCCTCGAGTGCATGCCTGAGTATCCTCTGGACAAGCCTGACAATGAGGGGAACACAGTGCTCCTGCTTGCCTACATGAAGGGCAACGCCAATCTGTGCCGTGCCATCGTGAGGGCCGGGGCACGGCTGGGTGTTAACAACAACCAAGGCATCAACATCTTCAACTACCAGGTGGCCACCAAGCAGCTGCTCTTCCGGCTCCTAGACATGTTGTCCAAAGAGCCGCCATGGTGTGACGGATCCAACTGTTACGAGTGCATTGCAAAGTTTGGAGTCACCACAAGGAAACATCACTGccGTCACTGTGGCCGCCTGCTCTGTCACAAGTGCTCCATGAAGGAGATCCCCATCATCAAGTTTGACCTGAACAAGCCCGTCCGGGTGTGCGACATCTGCTTCGACGTGCTGACTCTGGGAGGCGTGTCCTAGTGCCGCCCACCACCGAACCCACTTCCTTCATTCCAGAACAGAGCAGCCCCGGGGCCCCCCTGGTCCACGCTGGCAACGCCGCGCAACGCCGATGCCCAGACAAACGTAGGACCACACTTCTGTAATGTTCCAGTCTCTCCAATTGTACACATTGTAGCGGACGTTCGAGTAGAGTTTAATAGTCTGAAGATCGAGTTCATTATGTCAAGAGAGGAAACCGTGAACTGGAAACCTGACGCGGTTGTGCAGTTAGTGGCAAGGTCATGCATTTTGATTTGCACCTGATTTTGATCGACCGTTTTTAGGAATCATGTGGAATTGGTATATAATCACGTAATCCCTAGTGTCATGGTCCAGTAGTCATCGAGGTTACCTTCCACCGGGTCCCACGCGATAAAGAAAACCAGAGTCTAGGGAATGGCCTGCTTGGGTGTAATGGCCAAGTGCATCGTTTGCTGGAGCAAGAGATTTCAAAGCAGATGTGTTAGGGAGCATTACAAAGCATTGTCACCTTTGCTTTCACCGTTTTATACATGTCACATATACGGCCACATCATGCATGTAGATCTTACTGCTCGATCCGTGCGTCGTTTTGAATTGGTGCTTCAGTGATTGcatttaagaacaaaacaaaacgttttGCAGTGCCTATTCGATGATCATTTGCACTTTTATAGCTTATCAGTCCAAGGCATTGAACCCTCTTCCATAGCTTATTGTTTTCCTGCCCCCTTGAAACCAACTGGCGCTCGGAGCCTTGTAGCTGGAGATCACGAGACTGTTAAAGAGGTTACGAAGAGCACATCTTATATCAAGCCTTATCTCCACTCCATACCTTTTTAAACTGTACATCTAAACTTTTCCACTGCTGATGTCATCACTAAAATATGAGCTTTTCCCCCCTCACTAAAAAGTTCCTTTTACAAATCCGTACCGTTCCGAAAATATAGGGAAGACCTAATTTCTATGCAAATTTAAAGCACCAAACCaaggttttatgttttttaaattaagtctaCCGCTCCAAAAGGCTTTCAGTTACATCATGCGGATGCATGTTGCCATCACTTTACATTCGAATACTTTCTGACTAAATTACCGTGGGCTCCAAGACTGCAGTTTCTCCAAGGCGTGCACTTAAAGGGTAGATGGATATGGTTATACTTTATGTAAGGAACGTTTTCCAAGAACTGTCATTCTAACCATTTACAGATTACCTAATTGACAAAGGTGCACTTTATCCAAAAGACATGACATTAGGGTCTCTTAATATGTTGAGGGGGGGGTGGGTATTGTCCGCTCTAGGTATTGTTAAATTGTAcagataaatgtaaaatatttttgacCACTACAGCTGTTTTGTACTTTAATGCAGTTTGTGCTTCTTTATTTGTCATTGTGACAAACTTTAATCTTGCTTCTGTTAATCTTTTATGCACATTGTAATTGTATCTGTTAGTTCAGATATGTAGCCTGTTGCTTCCTATAACATCCTTGAAGGAGGACAAACTTTACATAAacgataaaaaaacaaagaaacaaaaaa

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K20129 ANKFY1; rabankyrin-5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192858 lncRNA upstream 47927 5444379 ~ 5445257 (+) True G153154
TU192816 lncRNA upstream 169261 5321060 ~ 5323923 (+) True G153118
TU192811 lncRNA upstream 184093 5307945 ~ 5309091 (+) True G153113
TU192775 lncRNA upstream 291649 5195788 ~ 5201535 (+) True G153082
TU192772 lncRNA upstream 302388 5190527 ~ 5190796 (+) True G153080
TU193001 lncRNA downstream 292498 5800648 ~ 5800892 (+) True G153271
TU193006 lncRNA downstream 408685 5916835 ~ 5955451 (+) True G153274
TU193057 lncRNA downstream 539980 6048130 ~ 6048438 (+) True G153312
TU193099 lncRNA downstream 724009 6232159 ~ 6234047 (+) True G153348
TU193133 lncRNA downstream 774838 6282988 ~ 6331371 (+) True G153381
AMCG00005621 mRNA upstream 3614 5479508 ~ 5489570 (+) True AMCG00005621
AMCG00005624 mRNA upstream 17537 5466148 ~ 5475647 (+) True AMCG00005624
AMCG00005613 mRNA upstream 132261 5356203 ~ 5360923 (+) True AMCG00005613
AMCG00005614 mRNA upstream 137483 5348831 ~ 5355701 (+) True AMCG00005614
AMCG00005615 mRNA upstream 153453 5325687 ~ 5339731 (+) True AMCG00005615
AMCG00005622 mRNA downstream 5890 5514040 ~ 5547029 (+) True AMCG00005622
AMCG00005593 mRNA downstream 69267 5577417 ~ 5593182 (+) True AMCG00005593
AMCG00005591 mRNA downstream 87021 5595171 ~ 5604521 (+) True AMCG00005591
AMCG00005592 mRNA downstream 104494 5612644 ~ 5617109 (+) True AMCG00005592
AMCG00005590 mRNA downstream 118556 5626706 ~ 5639936 (+) True AMCG00005590
TU192781 other upstream 271269 5214823 ~ 5221915 (+) False AMCG00005583
TU192612 other upstream 931700 4560213 ~ 4561484 (+) False AMCG00005546
TU192563 other upstream 1208221 4283060 ~ 4284963 (+) False AMCG00005538
TU192254 other upstream 2222345 3266742 ~ 3270839 (+) False AMCG00005498
TU193227 other downstream 979568 6487718 ~ 6488620 (+) True AMCG00005667
TU193523 other downstream 1752527 7260677 ~ 7265971 (+) True G153675
TU193739 other downstream 2707740 8215890 ~ 8230590 (+) False G153815
TU193852 other downstream 2996045 8504195 ~ 8507075 (+) False AMCG00005720
TU194290 other downstream 3927750 9435900 ~ 9438269 (+) True G154251

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00059008 False 3504 mRNA 0.52 25 NC_007116.7 30996322 ~ 31029436 (+)
grasscarp (Ctenopharyngodon idella) CI01000339_06216378_06233911.mRNA True 4065 mRNA 0.51 25 CI01000339 6216378 ~ 6234136 (+)