RNA id: AMCG00005615



Basic Information


Item Value
RNA id AMCG00005615
length 633
RNA type mRNA
GC content 0.52
exon number 7
gene id AMCG00005615
representative True

Chromosome Information


Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5325687 ~ 5339731 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGACTTCGTCATGGCTGCCCACCTTGAGAGAATCCACTGCGGCTTTCAGATCTTCCAGCTCCTTCGTCCTCTCCTGGCATTTATGGTGGATGCCCGTCTGCGTCACCCCCAGCAGCTTCTGTGGAAGCACAGGGAGACGCACAGCAAAGGCAGGTCTGATACAGGACGTGGCAGGCTAACCACTAAGAACCTGCTGAGTGCAACACAGGCAGAGATCCAGCAGAGAATCGGGGAGAGGGTCAAACAAATGGAGCAGATCAAACAAGCTGTGGACACTCTCAAGagCTTCCATACCCTGTGTGCTCAGACTGAAGCTGAAGAGCTGCCAACCGTCTCCGTTAACCCGTACTTCAACTTCGACCCCGTGACAAAAACAGTCTCGGAAATGAAGGTGCACCTGAATGAGTTCAGCAACGCGGAGCTGGCCAAGGTTAACGCCACAGTGCATGAGATGACGTTTTGCGAGCTGAATGAGCGGAAGAAAAGACTAACCATGAGTTCTAGTGAAGTTGCAGTCTACAGGGCACCAAGTTCAAGTGCAAGAAATCTACCCAGGGTTCGGGATGATTTCTTAAGATATCACCGGTCTTCCTCTGATGGTGTCCTCCTGCAAGTCTCTCAGCAGCTCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU192816 lncRNA upstream 1764 5321060 ~ 5323923 (+) True G153118
TU192811 lncRNA upstream 16596 5307945 ~ 5309091 (+) True G153113
TU192775 lncRNA upstream 124152 5195788 ~ 5201535 (+) True G153082
TU192772 lncRNA upstream 134891 5190527 ~ 5190796 (+) True G153080
TU192606 lncRNA upstream 790863 4532321 ~ 4534824 (+) True G152943
TU192858 lncRNA downstream 104648 5444379 ~ 5445257 (+) True G153154
TU193001 lncRNA downstream 460917 5800648 ~ 5800892 (+) True G153271
TU193006 lncRNA downstream 577104 5916835 ~ 5955451 (+) True G153274
TU193057 lncRNA downstream 708399 6048130 ~ 6048438 (+) True G153312
TU193099 lncRNA downstream 892428 6232159 ~ 6234047 (+) True G153348
AMCG00005612 mRNA upstream 14389 5310270 ~ 5311298 (+) True AMCG00005612
AMCG00005584 mRNA upstream 47162 5270397 ~ 5278525 (+) True AMCG00005584
AMCG00005583 mRNA upstream 83911 5214813 ~ 5241776 (+) True AMCG00005583
AMCG00005585 mRNA upstream 114350 5208800 ~ 5211337 (+) True AMCG00005585
AMCG00005569 mRNA upstream 183091 5127087 ~ 5142596 (+) True AMCG00005569
AMCG00005614 mRNA downstream 9100 5348831 ~ 5355701 (+) True AMCG00005614
AMCG00005613 mRNA downstream 16472 5356203 ~ 5360923 (+) True AMCG00005613
AMCG00005624 mRNA downstream 126417 5466148 ~ 5475647 (+) True AMCG00005624
AMCG00005621 mRNA downstream 139777 5479508 ~ 5489570 (+) True AMCG00005621
AMCG00005623 mRNA downstream 153453 5493184 ~ 5508150 (+) True AMCG00005623
TU192781 other upstream 103772 5214823 ~ 5221915 (+) False AMCG00005583
TU192612 other upstream 764203 4560213 ~ 4561484 (+) False AMCG00005546
TU192563 other upstream 1040724 4283060 ~ 4284963 (+) False AMCG00005538
TU192254 other upstream 2054848 3266742 ~ 3270839 (+) False AMCG00005498
TU193227 other downstream 1147987 6487718 ~ 6488620 (+) True AMCG00005667
TU193523 other downstream 1920946 7260677 ~ 7265971 (+) True G153675
TU193739 other downstream 2876159 8215890 ~ 8230590 (+) False G153815
TU193852 other downstream 3164464 8504195 ~ 8507075 (+) False AMCG00005720
TU194290 other downstream 4096169 9435900 ~ 9438269 (+) True G154251

Expression Profile