RNA id: AMCG00005817


Basic Information

Item Value
RNA id AMCG00005817
length 3435
RNA type mRNA
GC content 0.61
exon number 10
gene id AMCG00005817
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10431563 ~ 10436502 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCACATTGACGAGCTCTGTTCGATATGGCATCGAAAATGCGCCGCAGGTCCCGTTCGGGGTCGCGGACCTGGGCTCGGGAGCGATACCCGTCCAGCCGCTCCTCGGAGAGGAAGAGGGGCCGGAGTCGGTCCGGCTCCGGGCGGCGTGACGAAGGTCCGAGTTCGGGGGTGGGGGCTGCGAGGCGGACTCGGTCTGGGTCCGAAAGATGCAGCAGCAGGAGTAGCTCCAGATCGAGGTCCAGGTCCAGGTCTCCACAGTACCGACCCGCTTCCAGAAGCGGATCTGCCAACAGCGATGGCAGTAAAGACAGCTGTGGCTCAGAAGCGAGAGGGATAAAGACCAAACCAACAAACAGAGGAGAGGATAAAACTGtcgaaaagaaaaagaagaaaaagaaaaagaagggaGGCAGGCgaagggagagcaggagcccctCGTCCTCTGGGTCGAgtgcagagagggggagacgAGGGGTggacagcagagagagggagaggaggaagagggatggagagagccgggagaggaagaggaagagggatgGAGAAaacagggagaggaagagggatggagagagcagagagagggaaaggaacAGGGATGGAGAGAACAGGAAAAGGTatggagacagggagaggaggagggatggagaaagcagggacagggagaggaggagggatggagagagcagtgagagggagagagaggaaaggaggcCGGGACAGaggagtgtagagagagagagtcatagcagcagcagcagcgagagggagagagaaagggggaggagagagatgcAGAGCAGCAGGGAGTCGAAAAGAGAGAACGAGAGGAGCAGAATGAGGAGCAGTGACCGGGATAGAGAACGCGACAGTACCAGCAGGGAGAGGAGAAAccgggagagagggaagggtagtagagaaagagagagagacagggggagagaggTGGAAAGGCCAAGCAGGGACAGAAGAAGCCGGGTGAAAGAGATGAGTAGGGAGAGGGAGCAAGGGGCGCTCGGCTCTCCTGCAAcctgtctctctcgctcgctctcgcACTCCTCGGTCTCCTCgctctcttctccctccccgGAGCGCAGGAGGGGACTGTCAcctggggaggaggaggaggaggacggggTGGTGGCAGGGGGTCCGCAGGAGCAGCGGGACGAGGCGCGCAGGCAGAAGGAGCTGCTCAAGGCCCTGGAGACGCCAGAGGAGAAGAGAGCCCGGCGGCTGGCTAAGAAGGAGgcaaaggagaggaagaagagggagaagaTGGGCTGGAGCGAGGAGTACATGGGCTACACCAACGCAGACAACCCCTTTGGAGACAACAACCTGCTGGGCACCTTCAAATGGCAAAAGGtgggaagggagagggagggagacaggagaTGGGCTCTGCAGAAGAAGGGGATTGGGCACCTGGGGGAGAAGGAGCTGAAGGAGCGAAACAAACGCATCCAGGAGGAGAACCGGCGAGAGCTGCAGAAGGTGAAGCAGCTGCGCCTGGAGCGGGAGCGGGAGAAGGCCATGCGGGAGACGGAGCTGGAGCTGTtgcagagggagaaggaggcGGAGCACTTCAAGACGTGGGCGGAGCAGGAGGACAACTTCCACCTGCACCAGGCCAAGCTACGCTCTAAGATCCGTATCCGTGACGGCCGAGCAAAACCCATAGACCTGCTGGCCAAGTACATCAGCGCCGAGGATGACGACCTGGCCGTGGAGATGCACGAGCCCTACACCTTCCTGACCGGCCTGACGgtgtacatggagctggagcagggAAAGAACGTGGATTTCTGGCGCGACATGACAACCATCACCGAGGACGAGATTAGCAAACTGCGCAAACTGGAGGCATCAGGGAAAGGGCCGGGCGACCGTCGCGAGGGCATCAATGTGTCGGTCAGTTCGGACGTGCAGTGCGTGTTCAAGGGCAAGACCTTCAGCCAGCTGCAGGCGCTGCAGCTCAACATGGAGTCCAAGATCGCCGCCGGAGGCTCCAACCTGGACATCGGCTACTGGGAGAGCCTGCTGCAGCAGGTCAGGGTGTACATGGCCAGAGCCAGGCTGAGGGAGCGGCACCAGGACGTGCTGAGGCAGAAGCTGTACAAGCTGAAGCAGGAGCAGGGGGTGGAGAGTGAGCCGCTGTTCCCCATCGCCAAGCAGGAGCCCCCTTCACCACAGCCAGTgACTGGTGATGATGGTGCTGGAGCTGGCGAGGGTGGGGCGGCTGGTGTGGAGGACGCTGctgctgcctcctcctcctctactGCAGGGGCGGCGGAGGGCGAGGGTGGCGAGGGCGGTTCGGGCGGGGAGGCAGTGCTGACGGAGGAAGACCTGGCCCAGCAGAGCCTGGCGGAATACGACTCCGGCCGCTACAGTCCCCGCCTGCTGACCCCGGCCGAGCTGCCGCTGGACACGCACACCGTGGACCCCGAGGACGACCTGCAGAGGCTGCGGCTGGCCAGGACACAGCTGCAGGTCACAGGTCAGGCACGGGCCACGGCCTCTTACACTCGCTCGGgcGACGCGAGCGAGAGCGCGGAGGACGCATTCGTGCGGAGGGCGCGGGAGGGCATGGGCGGGGACGAGGCGCAGTTCAGCGTGGAGATGCCACTGACGGGGAAGATGTACCTGTGGGCCGACAAGTACCGGCCGCGCAAGCCCCGCTTCTTCAACCGCGTGCACACGGGCTTCGAGTGGAACAAGTACAACCAGACCCACTACGACTTCGACAACCCGCCGCCCAAGATCGTGCAGGGCTACAAGTTCAACATCTTCTACCCCGACCTGATCGACAAGCGCTCCACGCCGCAGTACTTCCTGGAGCCCTGCGCCGACAACAAGGACTTCGGTGTCCTGCGCTTCCACGCCGGGCCGCCCTACGAGGACATCGCCTTCAAGATTGTGAACCGCGAGTGGGAGTATTCTCACCGGCACGGCTTCCGCTGCCAGTTCGCCAACGGCATCTTCCAGCTGTGGTTCCACTTCAAGAGATACCGCTACCGCAGATagacggagagagaggggagaggagagaggtcAGTCCCTTCAGCCAGGTTAGTGGGCAGTGTGGTACTGTGAGGACGTGGATGTGGCCGGGGCCCAGACACAGGTCCGCAATGGTCTGGTATAGACTAATGACAGCGCTGGGCCACTGGAGGGAGCTGGGGAGTAATATGTACAGCCATCACCATAGGCAGGGATTCCACTGTAATACAAATGTCACTGCTGTTCATGGACGGAGTTGGTGCCCCCACACCAAACTGAACAGGAAACAGTTTTGTAACCAGCACGGACTGGTTTTCTGGGTCTTTTCTGAAAAGTTTCTGCATATTTTTAACCTGTTTCCCTGTTGTATGTCGGGAGGGGAGGGTGTCTTGTGTCCTGAGGTATGGATTGTAACTGTACCCCCC

Function

GO: NA

KEGG:

id description
K25058 CACTIN; cactin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194520 lncRNA upstream 75319 10267273 ~ 10356244 (+) True AMCG00005929
TU194528 lncRNA upstream 99469 10285514 ~ 10332094 (+) False G154447
TU194527 lncRNA upstream 102564 10328035 ~ 10328999 (+) True G154447
TU194536 lncRNA upstream 126654 10304218 ~ 10304909 (+) False AMCG00005851
TU194535 lncRNA upstream 128066 10302957 ~ 10303497 (+) True G154451
TU194561 lncRNA downstream 4565 10441067 ~ 10489854 (+) True G154473
TU194598 lncRNA downstream 87465 10523967 ~ 10526052 (+) True G154505
TU194687 lncRNA downstream 139477 10575979 ~ 10576437 (+) True G154574
TU194696 lncRNA downstream 231496 10667998 ~ 10668261 (+) True G154583
TU194697 lncRNA downstream 253641 10690143 ~ 10714707 (+) False AMCG00005835
AMCG00005819 mRNA upstream 2597 10423109 ~ 10428966 (+) True AMCG00005819
AMCG00005820 mRNA upstream 15426 10412525 ~ 10416137 (+) True AMCG00005820
AMCG00005851 mRNA upstream 126726 10297889 ~ 10304837 (+) True AMCG00005851
AMCG00005929 mRNA upstream 160103 10267273 ~ 10271460 (+) False AMCG00005929
AMCG00005927 mRNA upstream 170098 10260649 ~ 10261465 (+) True AMCG00005927
AMCG00005821 mRNA downstream 26333 10462835 ~ 10469406 (+) True AMCG00005821
AMCG00005818 mRNA downstream 43708 10480210 ~ 10486749 (+) True AMCG00005818
AMCG00005858 mRNA downstream 66005 10502507 ~ 10502822 (+) True AMCG00005858
AMCG00005856 mRNA downstream 67076 10503578 ~ 10507292 (+) True AMCG00005856
AMCG00005857 mRNA downstream 84354 10520856 ~ 10523831 (+) True AMCG00005857
TU194450 other upstream 343871 10080435 ~ 10087692 (+) False AMCG00005802
TU194427 other upstream 355061 10065160 ~ 10076502 (+) False AMCG00005802
TU194377 other upstream 547608 9881382 ~ 9883955 (+) True G154330
TU194323 other upstream 841765 9587802 ~ 9589798 (+) True G154283
TU194290 other upstream 993294 9435900 ~ 9438269 (+) True G154251
TU194579 other downstream 26035 10462537 ~ 10468351 (+) False AMCG00005821
TU194578 other downstream 34041 10470543 ~ 10471631 (+) True G154486
TU194591 other downstream 76002 10512504 ~ 10516390 (+) True G154499
TU194711 other downstream 285830 10722332 ~ 10730209 (+) False AMCG00005834
TU194757 other downstream 476895 10913397 ~ 10915729 (+) True G154636

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00033000 False 3139 mRNA 0.51 10 NC_007113.7 49608796 ~ 49627099 (-)
grasscarp (Ctenopharyngodon idella) CI01000073_00792429_00801911.mRNA True 2373 mRNA 0.51 10 CI01000073 792429 ~ 802248 (+)