RNA id: TCONS_00033000


Basic Information

Item Value
RNA id TCONS_00033000
length 3139
RNA type mRNA
GC content 0.51
exon number 10
gene id XLOC_016867
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 49608796 ~ 49627103 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGGATCGAAAAAGCATCGTAGGAGCCGATCGCGGTCCCGCTCTCGAGAAAGAGCCCGTGTTGTTAGACATGATCGCTCGCCCGGGGACAGACACAGTCGCAACCGCTCTCCGGTGAAAAGTTCCCGCAGGCGAGCGCGGTCCGACAGCGGCGGCTCCAGGAGCAGCGGGGGCTCCGCGGGCCCCAGCCGACAGAGAGGCAGAGAGTCCGGCCACTCCAGCGACTCTGACCGCcagcacagaaacacacacgGAAGAAACAGAGACAGCTCTTCAGATGACGACTACCATGATAAGAAGAAACAGGCGTTGAAGAAGAAACACAATGATGAAAAAGACAGCAGAAGCAGGAGAAGAAAGAGCAGAAGTTCTTCAGGTTCCAGCACAAACTCCAGCAGGGAGAGAAACCGATCCAAAACCAGcaggagcagagagagagaacgGAGGAGACGACAAAGCAGGAGCTCCAGCAGAGAGAGACACAGAGACCAGAGGAGGAGAAGAAACAGCCCAGAGAGAGATCGAGACAGACGCAGACGCTCACAGTCCAGATCCTCCAGTTCCTCCAGCTCCGACTCTGACCATGGAGGAAAGTCCACACAGGGTGGTTCATCCTCCAAAGAGGAGAAGAAGAAACAGAGGGATCTGATGAAGGCGCTGGAGACGCCGGAGGAGAAGAGAGCCAGACGTCTGGCCAAGAAAGAGGCCAAGGAGAGGAAGAAGAGAGAGAAGATGGGCTGGAGCGAAGAGTACATGGGCTACACCAATGCAGACAATCCCTTTGGAGATAACAACCTGCTCGGGACCTTCATCTGGCAGAAGgCTCTGGAGAAGAAAGGCATCGGCCATTTGTCCGAAAAAAATCTGAAGGACAGAAATAAACACATCCAGGAGGAAAACCGCAGGGAACTGCAAAAGGTGAAGCAGCTGCGTCTGGAGCGAGAGCGGGAGAAAGCCATGCGGGAGCAGGAGCTGGAGATGCTGCAGAGAGAAAAAGAGGCGGAGCATTTCAAAACATGGGCGGAGCAAGAGGACAACTTTCATCTGCATCAGGCCAAACTCAGGTCTAAGATCCGCATCCGGGACGGCCGAGCGAAACCCATCGACCTGCTGGCGAAATACATCAGCGCTGAGGATGACGATCTGTCTGTGGAGATGCACGAACCGTACACTTTCCTCAACGGACTGACCGTCACAGACATGGAAGACCTGCTGGAGGACATTAAGGTGTACATGGAGCTGGAATGTGGCAAGAATGTGGATTTCTGGAGGGATATGACCACCATTACTGAAGATGAAATCAGCAAACTGCGCAAACTGGAGGCGTCAGGGAAAGGGCCAGGTGACCGGCGTGAGGGCATAAACACCTCCGTCAGCACAGATGTCCAGAGTGTGTTTAAAGGGAAGACGTACAGTCAGCTTCAGGCCCTTTACATGAACATCGAGAGTAAGATTCAGGCTGGAGGCTCAAATCTGGACATCGGCTACTGGGAGAGTCTCCTGCAGCAGGTGCGCGTCTACATGGCACGAGCCAGgcTGAGAGAGCGTCATCAGGACGTCCTGCGGCAGAAGCTGTATAAACTCAAGCAGGAACAGGGTGTGGAGAGTGAACCGCTTTTCCCCATCATCAAAGAGGAGCCGGAGAAAGAGCAGCCCATCTCTAGAGAAGCGGGGTCTGGAGAAGAGGAGGCGGGCAGCTCTTCTCAGCAGGCAGACAGAGAGGAAGATGAAGACAGACGGAGCAGGAGGACGGGTGGAGAAGAGGCTGAGCGTTCTGGAAGGAGCAGTCCTGAGGAGGAGAAGaaaggagaggaggaggagggagaGAAAGATGAAGCCCCGGAGGCCGTGTTGACAGAGGAGGATCTGATCCAGCAGAGTCAGGCTGAGTATGACTCCGGCCGCTACAGTCCCACACTCCTGCAGAACTCGGAGCTGCCGCTGGACACACACATCATCGCGGAGGAGGAGGACCTGCAGAGACTCCTGCTGGCCCGCAGGCAGATGCAGGTGACCGGTGATGCAAGTGAAAGTGCTGAGGATTTATTTGTGCGTCGGGCTAAAGAGGGCATGGGCGGTGACGAGGCTCAGTTCAGCGTCGAAATGCCTTTGACTGGGAAAATGTACCTGTGGGCCGACAAATACCGTCCACGCAAACCCCGCTTCTTCAACCGCGTTCACACCGGCTTCGAGTGGAACAAATACAACCAGACGCATTACGACTTCGATAACCCGCCGCCCAAGATCGTCCAGGGCTACAAGTTCAACATCTTCTACCCCGACCTCATCGACAAGCGCTCGACTCCGCAGTACTTCCTGGAGCCCTGTCCCGACAATAAAGACTTCGGGATTCTGCGCTTTCATGCCGGACCGCCGTATGAAGACATCGCCTTTAAAATCGTCAACCGCGAGTGGGAATATTCACATCGCCATGGTTTCCGCTGCCAGTTCGCTAATGGAATCTTTCAGCTGTGGTTCCACTTTAAGAGATATCGCTACAGACGATGAAGAGGATGATCTGAGAACGGTTGAGTCGTGTTAGAGAAGAAGCTGTAACATTAGGGTCGATGTAAAACCACAAACACAGACTGTTTATTAACGCCACATACATCTgctgatagtggaaaagcaggttTTCACTGACGCAGACTTAAATATTTCGACATTTTCTGATTTCCAGGCACTCAGCTTGCATTTGAGACCATgctaattgttttaaagcagtgcttctcaaccacattcctagaggaccaccaacactgcatgttttagatgtctcgTTTGTCTGTTACACACAtaacaggtctttcagtctctgctgatgatttgaatcaggtgtgtttggttaaggaggcatagaaaatgtgcagagctggtggtcctccaggaacgtggtcgAGAAACactgtttaaagggatagttcaaccaaaaataaaacctatcatcatttaatcacatttatttgttcaaaactaaagaaaaaataaactcaaaggtttaaaaaTACACGAGGGAGGGGAATTTGTGACTTAATTGAAatatttggttgaactatccatttaagtattccttaaaaaatttatttcttGTATTTTGTGTAATTGAAATGATTCATTAAAGATTGTTTGCTAATTTTTA

Function

GO:

id name namespace
GO:0003407 neural retina development biological_process
GO:0008595 anterior/posterior axis specification, embryo biological_process
GO:0040019 positive regulation of embryonic development biological_process

KEGG:

id description
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-060503-322 Involved in anterior/posterior axis specification, embryo; eye development; and positive regulation of embryonic development. Acts upstream of or within neural retina development. Is expressed in eye; immature eye; and tail bud. Orthologous to human CACTIN (cactin, spliceosome C complex subunit).

Ensembl:

ensembl_id ENSDART00000083710

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032999 lncRNA downstream 52232 49555790 ~ 49556564 (-) True XLOC_016866
TCONS_00033955 lncRNA downstream 86519 49521249 ~ 49522277 (-) True XLOC_016865
TCONS_00033954 lncRNA downstream 154343 49446787 ~ 49454453 (-) True XLOC_016864
TCONS_00033953 lncRNA downstream 260592 49341587 ~ 49348204 (-) True XLOC_016862
TCONS_00033952 lncRNA downstream 864802 48739542 ~ 48743994 (-) True XLOC_016856
TCONS_00033004 lncRNA upstream 165108 49792207 ~ 49793005 (-) False XLOC_016870
TCONS_00033005 lncRNA upstream 165108 49792207 ~ 49793317 (-) False XLOC_016870
TCONS_00033956 lncRNA upstream 165108 49792207 ~ 49793420 (-) True XLOC_016870
TCONS_00033008 lncRNA upstream 217785 49844884 ~ 49851884 (-) True XLOC_016871
TCONS_00033013 lncRNA upstream 477712 50104811 ~ 50106618 (-) False XLOC_016875
TCONS_00032998 mRNA downstream 50864 49555768 ~ 49557932 (-) False XLOC_016866
TCONS_00032997 mRNA downstream 238754 49366684 ~ 49370042 (-) True XLOC_016863
TCONS_00032996 mRNA downstream 577493 49007592 ~ 49031303 (-) True XLOC_016861
TCONS_00032995 mRNA downstream 642365 48950787 ~ 48966431 (-) True XLOC_016860
TCONS_00032994 mRNA downstream 782089 48817958 ~ 48826707 (-) True XLOC_016859
TCONS_00033006 mRNA upstream 217531 49844630 ~ 49860723 (-) False XLOC_016871
TCONS_00033007 mRNA upstream 217635 49844734 ~ 49854432 (-) False XLOC_016871
TCONS_00033009 mRNA upstream 257597 49884696 ~ 49978227 (-) True XLOC_016872
TCONS_00033010 mRNA upstream 357060 49984159 ~ 49985351 (-) True XLOC_016873
TCONS_00033011 mRNA upstream 359989 49987088 ~ 50053006 (-) False XLOC_016874
TCONS_00032992 other downstream 861984 48746683 ~ 48746812 (-) True XLOC_016857
TCONS_00032991 other downstream 1043850 48564830 ~ 48564946 (-) True XLOC_016852
TCONS_00032983 other downstream 1202591 48405272 ~ 48406205 (-) True XLOC_016843
TCONS_00032976 other downstream 1451559 48145089 ~ 48157237 (-) True XLOC_016835
TCONS_00032964 other downstream 1755712 47852969 ~ 47853084 (-) True XLOC_016829
TCONS_00033002 other upstream 39657 49666756 ~ 49667049 (-) True XLOC_016868
TCONS_00033003 other upstream 140479 49767578 ~ 49769552 (-) True XLOC_016869
TCONS_00033024 other upstream 846327 50473426 ~ 50473542 (-) True XLOC_016880
TCONS_00033026 other upstream 1082267 50709366 ~ 50709482 (-) True XLOC_016882
TCONS_00033049 other upstream 1788404 51415503 ~ 51415811 (-) True XLOC_016902

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000073_00792429_00801911.mRNA True 2373 mRNA 0.51 10 CI01000073 792429 ~ 802248 (+)
bowfin (Amia calva) AMCG00005817 True 3435 mRNA 0.61 10 CM030142.1 10431563 ~ 10436502 (+)