RNA id: TCONS_00033952


Basic Information

Item Value
RNA id TCONS_00033952
length 445
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id XLOC_016856
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 48739542 ~ 48743994 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAATACACAGACATAAAAAGCGAAAATACATTATAGGCTAACCCATGCTCGTGCTCGAGTTTTGTTTCGTGAGCTCTGATCCATGATGCTGATAAGTGTTCGCCCTCAGGGAGGATCTCATTGTCGAATAAAAAGCGAAAGTATTTTTCCTCCATGGTATCATCAATTCTGTACAATCTCTCGGGACTACACAGCGATGTTCAAGCTCCAGGCTGATCTGGTCATTTCAGATTAGAGAAATCCACAGACATATTGTAAAAGCAGATGGACATGTCTGATCATGACAATGTGGGATCTGTGGAGCCTCATGGAGTGTCTAAAATCACCATCTCTGCTCAGAATGGAAGCAGTGTTTCAGCACCTGTGATTTTAAACTCAACAGTCACAGGAAATATTAGTATTTCTAATAATTTCTTTCCTGAACCTGCAGCTGAAGTCACAGGTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033413 lncRNA downstream 7014 48731479 ~ 48732528 (-) True XLOC_016855
TCONS_00033412 lncRNA downstream 7398 48731479 ~ 48732144 (-) False XLOC_016855
TCONS_00033411 lncRNA downstream 24906 48711148 ~ 48714636 (-) True XLOC_016854
TCONS_00033951 lncRNA downstream 103962 48634551 ~ 48635580 (-) True XLOC_016853
TCONS_00033950 lncRNA downstream 103966 48634551 ~ 48635576 (-) False XLOC_016853
TCONS_00033953 lncRNA upstream 597593 49341587 ~ 49348204 (-) True XLOC_016862
TCONS_00033954 lncRNA upstream 702793 49446787 ~ 49454453 (-) True XLOC_016864
TCONS_00033955 lncRNA upstream 777255 49521249 ~ 49522277 (-) True XLOC_016865
TCONS_00032999 lncRNA upstream 811796 49555790 ~ 49556564 (-) True XLOC_016866
TCONS_00033004 lncRNA upstream 1048213 49792207 ~ 49793005 (-) False XLOC_016870
TCONS_00032990 mRNA downstream 178071 48545804 ~ 48561471 (-) True XLOC_016851
TCONS_00032989 mRNA downstream 199869 48519594 ~ 48539673 (-) True XLOC_016850
TCONS_00032987 mRNA downstream 227092 48478399 ~ 48512450 (-) True XLOC_016848
TCONS_00032988 mRNA downstream 242367 48496207 ~ 48497175 (-) True XLOC_016849
TCONS_00032986 mRNA downstream 275863 48458703 ~ 48463679 (-) True XLOC_016847
TCONS_00032993 mRNA upstream 4260 48748254 ~ 48753873 (-) True XLOC_016858
TCONS_00032994 mRNA upstream 73964 48817958 ~ 48826707 (-) True XLOC_016859
TCONS_00032995 mRNA upstream 206793 48950787 ~ 48966431 (-) True XLOC_016860
TCONS_00032996 mRNA upstream 263598 49007592 ~ 49031303 (-) True XLOC_016861
TCONS_00032997 mRNA upstream 622690 49366684 ~ 49370042 (-) True XLOC_016863
TCONS_00032991 other downstream 174596 48564830 ~ 48564946 (-) True XLOC_016852
TCONS_00032983 other downstream 333337 48405272 ~ 48406205 (-) True XLOC_016843
TCONS_00032976 other downstream 582305 48145089 ~ 48157237 (-) True XLOC_016835
TCONS_00032964 other downstream 886458 47852969 ~ 47853084 (-) True XLOC_016829
TCONS_00032961 other downstream 1193903 47541737 ~ 47545639 (-) True XLOC_016826
TCONS_00032992 other upstream 2689 48746683 ~ 48746812 (-) True XLOC_016857
TCONS_00033002 other upstream 922762 49666756 ~ 49667049 (-) True XLOC_016868
TCONS_00033003 other upstream 1023584 49767578 ~ 49769552 (-) True XLOC_016869
TCONS_00033024 other upstream 1729432 50473426 ~ 50473542 (-) True XLOC_016880
TCONS_00033026 other upstream 1965372 50709366 ~ 50709482 (-) True XLOC_016882