RNA id: TCONS_00032987


Basic Information

Item Value
RNA id TCONS_00032987
length 934
RNA type mRNA
GC content 0.44
exon number 2
gene id XLOC_016848
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 48478399 ~ 48512450 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGAGAGTCTGGTTGTGCCGCTTCTGCTGTCAGGTTGGTTTGAGCCTCTGTAATCTGTATTTATGATGATGTGCTGATATAGAGGATTCAACATGTTGGTTTTTACAGGGCTCTTCTGCAGCAGTTCTGCTGTTTCCCGTCAGTATCACTATATAAACGTGAGAATGACATGGCCAGATGCTCAGAGTTACTGCAGAGAGAGATTCACTGATCTGGCTACTGTAGACACCATGGATGATGTGAACAGGCTGTTAAATTTAGTGAATGACGGATTCCTTGGGTCAGTGTGGATTGGACTGAAGAGTGGGACAGAGAAACGCTGGGATTGGTTGAATGGAGAAAACTCTTCTCAGTACTTAAACTGGGGTTCAGGAATGCCAAGTGATGATGGATATTGTGTAGCTACTTTAGATGGCAGTTGGGGTGATATGCCATGCGATTATGAGCGATATTTTGCATGTCAGAAAGACTCCACATACTACATGATCGAAAGTGCAGGGCCTCAAACTTGGACAAACGCTCAGAGTTACTGCAGACAGCATTACACAGACCTGCCCATAATTCACAGCTCTGTGGAGAACGACCAGCTAACTGCAGCTATTATAAAAGGATTTTACGTCTGGATTGGTCTTTACCGGGACCCTTGGGAATGGTCTGATCAGTGGGATCTCCGATTCAGATACTGGGCATCCGGTCAACCAAACCTGAGAGTAGGACCTGACTGTGCCAGCATGGCAACATTTGATTCTGGAAAATGGAATCAAGAAGGCTGTAATGCACTGCATCCTTTTATGTGCCATGCAGGTGAGTTTAACCAGTTAACAGATTCAAATGGTCACTCTTGAAACATTGAGATTGTGACATATGAGCAATGTATCTTCCATGTTGAAAATGACTACATGTGTGTATTTCACTagaggaaaagagaaaacaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000160132

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033410 lncRNA downstream 55266 48418390 ~ 48423133 (-) True XLOC_016845
TCONS_00033949 lncRNA downstream 72196 48405044 ~ 48406203 (-) False XLOC_016843
TCONS_00033948 lncRNA downstream 82875 48394943 ~ 48395524 (-) False XLOC_016842
TCONS_00033409 lncRNA downstream 202856 48267344 ~ 48275543 (-) False XLOC_016839
TCONS_00033950 lncRNA upstream 122101 48634551 ~ 48635576 (-) False XLOC_016853
TCONS_00033951 lncRNA upstream 122101 48634551 ~ 48635580 (-) True XLOC_016853
TCONS_00033411 lncRNA upstream 198698 48711148 ~ 48714636 (-) True XLOC_016854
TCONS_00033412 lncRNA upstream 219029 48731479 ~ 48732144 (-) False XLOC_016855
TCONS_00033413 lncRNA upstream 219029 48731479 ~ 48732528 (-) True XLOC_016855
TCONS_00032986 mRNA downstream 14720 48458703 ~ 48463679 (-) True XLOC_016847
TCONS_00032985 mRNA downstream 30174 48447353 ~ 48448225 (-) True XLOC_016846
TCONS_00032984 mRNA downstream 63003 48413946 ~ 48415396 (-) True XLOC_016844
TCONS_00032982 mRNA downstream 82338 48395488 ~ 48396061 (-) True XLOC_016842
TCONS_00032980 mRNA downstream 103057 48309600 ~ 48375342 (-) False XLOC_016841
TCONS_00032989 mRNA upstream 7144 48519594 ~ 48539673 (-) True XLOC_016850
TCONS_00032990 mRNA upstream 33354 48545804 ~ 48561471 (-) True XLOC_016851
TCONS_00032993 mRNA upstream 235804 48748254 ~ 48753873 (-) True XLOC_016858
TCONS_00032994 mRNA upstream 305508 48817958 ~ 48826707 (-) True XLOC_016859
TCONS_00032995 mRNA upstream 438337 48950787 ~ 48966431 (-) True XLOC_016860
TCONS_00032983 other downstream 72194 48405272 ~ 48406205 (-) True XLOC_016843
TCONS_00032976 other downstream 321162 48145089 ~ 48157237 (-) True XLOC_016835
TCONS_00032964 other downstream 625315 47852969 ~ 47853084 (-) True XLOC_016829
TCONS_00032961 other downstream 932760 47541737 ~ 47545639 (-) True XLOC_016826
TCONS_00032960 other downstream 1013563 47432087 ~ 47464836 (-) True XLOC_016825
TCONS_00032991 other upstream 52380 48564830 ~ 48564946 (-) True XLOC_016852
TCONS_00032992 other upstream 234233 48746683 ~ 48746812 (-) True XLOC_016857
TCONS_00033002 other upstream 1154306 49666756 ~ 49667049 (-) True XLOC_016868
TCONS_00033003 other upstream 1255128 49767578 ~ 49769552 (-) True XLOC_016869
TCONS_00033024 other upstream 1960976 50473426 ~ 50473542 (-) True XLOC_016880

Expression Profile

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