RNA id: TCONS_00032960


Basic Information

Item Value
RNA id TCONS_00032960
length 882
RNA type processed_transcript
GC content 0.46
exon number 3
gene id XLOC_016825
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 47432087 ~ 47464836 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAAACGCACCCGTGGACGCGCCTAATCACCGAATGCAAGGTGAAGGGAGCGTGCAGTCAGAGGTGTGAATCTGAGAGCAGGAGCTGTCCGACAACAGAGGTGCTGAAATTACAGCCACTCGCATGAAGATCCAGGTCTACTGACGTGCACCGACACAGCAGTCCAATTACTGGAATTACAGCCAATCCGGCAGAAGCGGTCAGATGTCAATTAAAGTCAGCATGGGTGTCTGTGGCGCGGCTCTTGTTCTGAGGGCCGCCTGGCCTGTGGCGCGCGGGCTCCGCTCTCCACGCTGCTGCGCTAATCCGTTTATGGAGCACCTGGGACCGTGGACGGCAATAACATGCGCTTATCCGTCGCCGCCGCGAAACATGCTCATCTGTGCACAGCAATGCGATAATGCTCACTTCCCGGGAGGACCAGAAGGCCACTTTACCCCTTGATTGAACTGTCGACGTCTCTGCGGGTTGATAACTCCGAGATGACAGTCAGCGTATTTGTCACATTAACCGACAAATCCGACAAAGCGTCATGATCCAGGTTTTTTAAAAGggaattttgttaaattattttaactcgttttaggtacactgtaaaaaaaatgcaggatttcacacaattcattcatgttgtcataACACAAATCGAGTATAAaaaaagttgattgaacataaaacaattaagttgttgtcAAAATCCCAAGAGTTTTGtagtttcagctaattttaaataagcagttttaacACGAAATCTTTTTTTGTAAGAGTATATATTCGAAGTTCTGTTTGAACTATTGACAGTGTGAAGTTTTGTTCAGTTTGATTGATCAGGGGTCTCTGTGAATGAACGGGGCCTGTTTGACTGACGTGAGTTTCTCAATG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000133615

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033941 lncRNA downstream 64935 47357321 ~ 47367152 (-) False XLOC_016823
TCONS_00033940 lncRNA downstream 64935 47357321 ~ 47367152 (-) True XLOC_016823
TCONS_00033939 lncRNA downstream 87261 47341771 ~ 47344826 (-) True XLOC_016821
TCONS_00033407 lncRNA downstream 332426 47090745 ~ 47099661 (-) True XLOC_016819
TCONS_00033406 lncRNA downstream 566525 46863035 ~ 46865562 (-) True XLOC_016817
TCONS_00033942 lncRNA upstream 521611 47986447 ~ 47988542 (-) False XLOC_016834
TCONS_00033943 lncRNA upstream 521611 47986447 ~ 47988542 (-) False XLOC_016834
TCONS_00032970 lncRNA upstream 521611 47986447 ~ 47988542 (-) False XLOC_016834
TCONS_00033944 lncRNA upstream 521611 47986447 ~ 47988598 (-) False XLOC_016834
TCONS_00033945 lncRNA upstream 521611 47986447 ~ 48010815 (-) False XLOC_016834
TCONS_00032958 mRNA downstream 882 47370323 ~ 47431205 (-) False XLOC_016824
TCONS_00032959 mRNA downstream 882 47379266 ~ 47431205 (-) True XLOC_016824
TCONS_00032946 mRNA downstream 392325 47038403 ~ 47039762 (-) True XLOC_016818
TCONS_00032944 mRNA downstream 1740959 45666146 ~ 45691128 (-) True XLOC_016814
TCONS_00032938 mRNA downstream 1768142 45655294 ~ 45663945 (-) False XLOC_016813
TCONS_00032962 mRNA upstream 122402 47587238 ~ 47620806 (-) True XLOC_016827
TCONS_00032963 mRNA upstream 179205 47644041 ~ 47681454 (-) True XLOC_016828
TCONS_00032965 mRNA upstream 404971 47869807 ~ 47870649 (-) True XLOC_016830
TCONS_00032966 mRNA upstream 435670 47900506 ~ 47904090 (-) False XLOC_016831
TCONS_00032967 mRNA upstream 438448 47903284 ~ 47904043 (-) True XLOC_016831
TCONS_00032951 other downstream 83305 47345209 ~ 47348782 (-) False XLOC_016822
TCONS_00032957 other downstream 83311 47348088 ~ 47348776 (-) True XLOC_016822
TCONS_00032955 other downstream 83316 47347109 ~ 47348771 (-) False XLOC_016822
TCONS_00032956 other downstream 83316 47347177 ~ 47348771 (-) False XLOC_016822
TCONS_00032952 other downstream 83330 47346497 ~ 47348757 (-) False XLOC_016822
TCONS_00032961 other upstream 76901 47541737 ~ 47545639 (-) True XLOC_016826
TCONS_00032964 other upstream 388133 47852969 ~ 47853084 (-) True XLOC_016829
TCONS_00032976 other upstream 680253 48145089 ~ 48157237 (-) True XLOC_016835
TCONS_00032983 other upstream 940436 48405272 ~ 48406205 (-) True XLOC_016843
TCONS_00032991 other upstream 1099994 48564830 ~ 48564946 (-) True XLOC_016852

Expression Profile

//