XLOC_016834


Basic Information

Item Value
gene id XLOC_016834
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 47986447 ~ 48010815 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033942
AAATCTTTACAGTCAGTTTTAGCAAGCACTGCGTCAACATCAGTGTCCAGAAATATCCAGCAGCAGAACTTTATTTACATGAAGCAAGCCTTAATCAACCAGATATACACTGCTATCAAAGCATCAGATATAATTCCTCAAAGGGTCGAAAATGGGTGGTACTAACACAAGAGCTGAAAAAGCAGAGCGAGAACGTAATGAAGCTCAAGCAAAAAAGCAAGAACTCGAGAAAGAAGTTCAAAAGCTACAACAAGAAAAAGAGTTTCAGCAAAGAACAGAAGAAGAAAGGAGAAGAGTGGACACAGAGAATAGAAATAGAGAACAAGAAGAAAAGACGAGGATTCACAGAGAAAAGGAAACTTAACCACAAGTTATCAACACTATCAACTAAAGTTTCTGTCAACAGTTCTTTAGTGAAATAAGAGAAATTATGGGAGCTATTTATTGTGTAATTGCCCATAGAGAAAATAACTCATATTAGActataaatgattaaaacattaaaacaactgTGACATTGTTTATTCAGATCTAATGTTTCAGAAAACATGATATCAATATTATCACTGTTTCCACTGTAACTTCAGAGCACTAGTGATGTCAAAAAAGGTACATTATGTGTCCTCACCTTAAATAAGAAACCATCATCGCAATTGTTTTTGTCTGAAGTGACCTTGAAACATGATACACTTTTACAGCATGAGTTACAAAGGGTACTGTTTACCTATGATTGCATGACAATTTAATCTATGTAAAAGAGAAACTAAATCATTGTCTATTGACGTAATACTTGCAGATTCGTAAAAAGATGCTTAATAAAATGCTTCAACAGAACACTGaggagttttttattttatttatcggTACACAGAGTAAAATTCAGAACTGTGATCACAGAACGTTAAACACTTTCACATGTTTTGGTTatattcattctccttcggcttagtctcttttttagaggtcgccacagtggaatgaaccaccaactattccagcatgttttacacaacggatgccctttcagcagcaacccagtactgagaaac
>TCONS_00033943
AAATCTTTACAGTCAGTTTTAGCAAGCACTGCGTCAACATCAGTGTCCAGAAATATCCAGCAGCAGAACTTTATTTACATGAAGCAAGCCTTAATCAACCAGATATACACTGCTATCAAAGGTAAATATATTGTCATTGCTTTTctcaaaacatatttctaaaataacttatataatgtaaaaaaggcagctttaaaataattacaattatgaaTGTAGAAATGCAGGCAGAAAAGGAGATCTAATATGGAAATTTacgtctctctttctctttctttcgttctttacacattcacacacacacgcacatctaTCAAAGTTACAGTATTCCAACATGGCTCTATAAAGGTGTTGTGTTCTAGGAGTCCATAAATTCCAGCTGTGTTTGAAAAGTGCAAAGACACTGAAACACTACCGAAGGAGAGCAGGTAACACAAATTTGTGccaaatttttttagtttttattaaaacttagGTTAAAATAGCCAAAGTATTTTGGCAAGTAATCGCCAGATTCAGATGTTACAGTAAAGTCATTTTTTGAaacaatgctatttttttttttatagaaagaaACATCAAgagttaatgaatgaatcattgttttattcaatgttttttgGTTGCTAAAAGTAAACAGCTAAAAGTATGGTAAAACTAGTGTTGAATTTCAGTTAATAATGACAGTTCAACATAACCACAAACTATTTAGAccttaaatcaaatatttttattgtatatatgatatattatagcgtgtgtgtttgtgacctatcaggacacaaatctgtaaaatgacataggtatgacaggTATTACAAGAAGGTGGTGACGAGGAAATTGCTGATGTCCTCATttttcaaaaagcttataaatcacacaatgagcttttttttagaaagtaaaactgtacacagtttcctgtGAGGATTGGGGTTAGGGGTAGGGTGAGGTTAGGGCAAttcaaaatacagtttgtacagtataaaaacagtgGAAGCCTATGTAATGTCTCtaaaattcacaaaaacaagTGTGTGTAATTGTAATTTTAGGATATCACCAAATGTACTTAAATTCATTTAGCATGAAATAAAACTGTGCTTCTGTAACATTAAAGAACATTATTTCATTTTgtgacagttttctttatttttctcctTTACAGCATCAGATATAATTCCTCAAAGGGTCGAAAATGGGTGGTACTAACACAAGAGCTGAAAAAGCAGAGCGAGAACGTAATGAAGCTCAAGCAAAAAAGCAAGAACTCGAGAAAGAAGTTCAAAAGCTACAACAAGAAAAAGAGTTTCAGCAAAGAACAGAAGAAGAAAGGAGAAGAGTGGACACAGAGAATAGAAATAGAGAACAAGAAGAAAAGACGAGGATTCACAGAGAAAAGGAAACTTAACCACAAGTTATCAACACTATCAACTAAAGTTTCTGTCAACAGTTCTTTAGTGAAATAAGAGAAATTATGGGAGCTATTTATTGTGTAATTGCCCATAGAGAAAATAACTCATATTAGActataaatgattaaaacattaaaacaactgTGACATTGTTTATTCAGATCTAATGTTTCAGAAAACATGATATCAATATTATCACTGTTTCCACTGTAACTTCAGAGCACTAGTGATGTCAAAAAAGGTACATTATGTGTCCTCACCTTAAATAAGAAACCATCATCGCAATTGTTTTTGTCTGAAGTGACCTTGAAACATGATACACTTTTACAGCATGAGTTACAAAGGGTACTGTTTACCTATGATTGCATGACAATTTAATCTATGTAAAAGAGAAACTAAATCATTGTCTATTGACGTAATACTTGCAGATTCGTAAAAAGATGCTTAATAAAATGCTTCAACAGAACACTGaggagttttttattttatttatcggTACACAGAGTAAAATTCAGAACTGTGATCACAGAACGTTAAACACTTTCACATGTTTTGGTTatattcattctccttcggcttagtctcttttttagaggtcgccacagtggaatgaaccaccaactattccagcatgttttacacaacggatgccctttcagcagcaacccagtactgagaaac
>TCONS_00032970
AAATCTTTACAGTCAGTTTTAGCAAGCACTGCGTCAACATCAGTGTCCAGAAATATCCAGCAGCAGAACTTTATTTACATGAAGCAAGCCTTAATCAACCAGATATACACTGCTATCAAAGGAGTCCATAAATTCCAGCTGTGTTTGAAAAGTGCAAAGACACTGAAACACTACCGAAGGAGAGCAGCATCAGATATAATTCCTCAAAGGGTCGAAAATGGGTGGTACTAACACAAGAGCTGAAAAAGCAGAGCGAGAACGTAATGAAGCTCAAGCAAAAAAGCAAGAACTCGAGAAAGAAGTTCAAAAGCTACAACAAGAAAAAGAGTTTCAGCAAAGAACAGAAGAAGAAAGGAGAAGAGTGGACACAGAGAATAGAAATAGAGAACAAGAAGAAAAGACGAGGATTCACAGAGAAAAGGAAACTTAACCACAAGTTATCAACACTATCAACTAAAGTTTCTGTCAACAGTTCTTTAGTGAAATAAGAGAAATTATGGGAGCTATTTATTGTGTAATTGCCCATAGAGAAAATAACTCATATTAGActataaatgattaaaacattaaaacaactgTGACATTGTTTATTCAGATCTAATGTTTCAGAAAACATGATATCAATATTATCACTGTTTCCACTGTAACTTCAGAGCACTAGTGATGTCAAAAAAGGTACATTATGTGTCCTCACCTTAAATAAGAAACCATCATCGCAATTGTTTTTGTCTGAAGTGACCTTGAAACATGATACACTTTTACAGCATGAGTTACAAAGGGTACTGTTTACCTATGATTGCATGACAATTTAATCTATGTAAAAGAGAAACTAAATCATTGTCTATTGACGTAATACTTGCAGATTCGTAAAAAGATGCTTAATAAAATGCTTCAACAGAACACTGaggagttttttattttatttatcggTACACAGAGTAAAATTCAGAACTGTGATCACAGAACGTTAAACACTTTCACATGTTTTGGTTatattcattctccttcggcttagtctcttttttagaggtcgccacagtggaatgaaccaccaactattccagcatgttttacacaacggatgccctttcagcagcaacccagtactgagaaac
>TCONS_00033944
tttttttctgacaacaCTCTTTCGTGTGAAAGTCCCCTTACATGACAATTAAGATCAAATCTTTACAGTCAGTTTTAGCAAGCACTGCGTCAACATCAGTGTCCAGAAATATCCAGCAGCAGAACTTTATTTACATGAAGCAAGCCTTAATCAACCAGATATACACTGCTATCAAAGTTACAGTATTCCAACATGGCTCTATAAAGGTGTTGTGTTCTAGGAGTCCATAAATTCCAGCTGTGTTTGAAAAGTGCAAAGACACTGAAACACTACCGAAGGAGAGCAGCATCAGATATAATTCCTCAAAGGGTCGAAAATGGGTGGTACTAACACAAGAGCTGAAAAAGCAGAGCGAGAACGTAATGAAGCTCAAGCAAAAAAGCAAGAACTCGAGAAAGAAGTTCAAAAGCTACAACAAGAAAAAGAGTTTCAGCAAAGAACAGAAGAAGAAAGGAGAAGAGTGGACACAGAGAATAGAAATAGAGAACAAGAAGAAAAGACGAGGATTCACAGAGAAAAGGAAACTTAACCACAAGTTATCAACACTATCAACTAAAGTTTCTGTCAACAGTTCTTTAGTGAAATAAGAGAAATTATGGGAGCTATTTATTGTGTAATTGCCCATAGAGAAAATAACTCATATTAGActataaatgattaaaacattaaaacaactgTGACATTGTTTATTCAGATCTAATGTTTCAGAAAACATGATATCAATATTATCACTGTTTCCACTGTAACTTCAGAGCACTAGTGATGTCAAAAAAGGTACATTATGTGTCCTCACCTTAAATAAGAAACCATCATCGCAATTGTTTTTGTCTGAAGTGACCTTGAAACATGATACACTTTTACAGCATGAGTTACAAAGGGTACTGTTTACCTATGATTGCATGACAATTTAATCTATGTAAAAGAGAAACTAAATCATTGTCTATTGACGTAATACTTGCAGATTCGTAAAAAGATGCTTAATAAAATGCTTCAACAGAACACTGaggagttttttattttatttatcggTACACAGAGTAAAATTCAGAACTGTGATCACAGAACGTTAAACACTTTCACATGTTTTGGTTatattcattctccttcggcttagtctcttttttagaggtcgccacagtggaatgaaccaccaactattccagcatgttttacacaacggatgccctttcagcagcaacccagtactgagaaac
>TCONS_00033945
TTCTACACAAATTCTGTTACAGGAAATTCCATTACAAAGATGTCCGACTGTAGGATCATTGAACTGGCATGTCTTGGCCGGCCTTTTCAATTAGGGATGCTTTATGACTGCCGAACGGATCTTCTCATTCCAGCATCAGATATAATTCCTCAAAGGGTCGAAAATGGGTGGTACTAACACAAGAGCTGAAAAAGCAGAGCGAGAACGTAATGAAGCTCAAGCAAAAAAGCAAGAACTCGAGAAAGAAGTTCAAAAGCTACAACAAGAAAAAGAGTTTCAGCAAAGAACAGAAGAAGAAAGGAGAAGAGTGGACACAGAGAATAGAAATAGAGAACAAGAAGAAAAGACGAGGATTCACAGAGAAAAGGAAACTTAACCACAAGTTATCAACACTATCAACTAAAGTTTCTGTCAACAGTTCTTTAGTGAAATAAGAGAAATTATGGGAGCTATTTATTGTGTAATTGCCCATAGAGAAAATAACTCATATTAGActataaatgattaaaacattaaaacaactgTGACATTGTTTATTCAGATCTAATGTTTCAGAAAACATGATATCAATATTATCACTGTTTCCACTGTAACTTCAGAGCACTAGTGATGTCAAAAAAGGTACATTATGTGTCCTCACCTTAAATAAGAAACCATCATCGCAATTGTTTTTGTCTGAAGTGACCTTGAAACATGATACACTTTTACAGCATGAGTTACAAAGGGTACTGTTTACCTATGATTGCATGACAATTTAATCTATGTAAAAGAGAAACTAAATCATTGTCTATTGACGTAATACTTGCAGATTCGTAAAAAGATGCTTAATAAAATGCTTCAACAGAACACTGaggagttttttattttatttatcggTACACAGAGTAAAATTCAGAACTGTGATCACAGAACGTTAAACACTTTCACATGTTTTGGTTatattcattctccttcggcttagtctcttttttagaggtcgccacagtggaatgaaccaccaactattccagcatgttttacacaacggatgccctttcagcagcaacccagtactgagaaac
>TCONS_00032971
TTACATGAAGCAAGCCTTAATCAACCAGATATACACTGCTATCAAAGGTAAATATATTGTCATTGCTTTTctcaaaacatatttctaaaataacttatataatgtaaaaaaggcagctttaaaataattacaattatgaaTGTAGAAATGCAGGCAGAAAAGGAGATCTAATATGGAAATTTacgtctctctttctctttctttcgttctttacacattcacacacacacgcacatctaTCAAAGTTACAGTATTCCAACATGGCTCTATAAAGGTGTTGTGTTCTAGGAGTCCATAAATTCCAGCTGTGTTTGAAAAGTGCAAAGACACTGAAACACTACCGAAGGAGAGCAGCATCAGATATAATTCCTCAAAGGGTCGAAAATGGGTGGTACTAACACAAGAGCTGAAAAAGCAGAGCGAGAACGTAATGAAGCTCAAGCAA

Function

GO:

id name namespace
GO:0006030 chitin metabolic process biological_process
GO:0006032 chitin catabolic process biological_process
GO:0008152 metabolic process biological_process
GO:0042737 drug catabolic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0009056 catabolic process biological_process
GO:0046348 amino sugar catabolic process biological_process
GO:1901072 glucosamine-containing compound catabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0009410 response to xenobiotic stimulus biological_process
GO:0006508 proteolysis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0071466 cellular response to xenobiotic stimulus biological_process
GO:0019432 triglyceride biosynthetic process biological_process
GO:0006572 tyrosine catabolic process biological_process
GO:0006026 aminoglycan catabolic process biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0008395 steroid hydroxylase activity molecular_function
GO:0004175 endopeptidase activity molecular_function
GO:0004180 carboxypeptidase activity molecular_function
GO:0004181 metallocarboxypeptidase activity molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004568 chitinase activity molecular_function
GO:0046914 transition metal ion binding molecular_function
GO:0071916 dipeptide transmembrane transporter activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008235 metalloexopeptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008238 exopeptidase activity molecular_function
GO:0140096 catalytic activity, acting on a protein molecular_function
GO:0017171 serine hydrolase activity molecular_function
GO:0043169 cation binding molecular_function
GO:0008061 chitin binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-070912-320 No description available

Ensembl:

ensembl_id ENSDARG00000095362

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033942 False 1049 lncRNA 0.35 2 47986447 47988542
TCONS_00033943 False 2096 lncRNA 0.33 1 47986447 47988542
TCONS_00032970 False 1115 lncRNA 0.36 3 47986447 47988542
TCONS_00033944 False 1214 lncRNA 0.36 3 47986447 47988598
TCONS_00033945 False 1061 lncRNA 0.36 3 47986447 48010815
TCONS_00032971 True 445 lncRNA 0.35 2 47987284 47988468

Neighbor

gene id symbol gene type direction distance location
XLOC_016833 fzd8b coding downstream 28774 47955160 ~ 47957673 (-)
XLOC_016832 ftr24 coding downstream 62644 47916204 ~ 47923803 (-)
XLOC_016831 ftr22 coding downstream 82357 47900506 ~ 47904090 (-)
XLOC_016830 ftr05 coding downstream 115798 47869807 ~ 47870649 (-)
XLOC_016829 CU929191.1 coding downstream 133363 47852969 ~ 47853084 (-)
XLOC_016835 pfkpb coding upstream 108679 48119494 ~ 48171441 (-)
XLOC_016836 snorc coding upstream 171789 48182604 ~ 48196092 (-)
XLOC_016837 gigyf2 coding upstream 192463 48203278 ~ 48255843 (-)
XLOC_016838 NA coding upstream 252616 48263431 ~ 48265811 (-)
XLOC_016839 NA coding upstream 256529 48267344 ~ 48275543 (-)
XLOC_016826 BX085193.3 non-coding downstream 440808 47541737 ~ 47545639 (-)
XLOC_016825 BX085193.1 non-coding downstream 521611 47432087 ~ 47464836 (-)
XLOC_016823 NA non-coding downstream 619295 47357321 ~ 47367152 (-)
XLOC_016822 BX085193.2 non-coding downstream 637665 47345041 ~ 47348782 (-)
XLOC_016842 NA non-coding upstream 384128 48394943 ~ 48396061 (-)
XLOC_016843 NA non-coding upstream 394229 48405044 ~ 48406205 (-)
XLOC_016845 NA non-coding upstream 407575 48418390 ~ 48423133 (-)

Expression


Co-expression Network