XLOC_016823


Basic Information

Item Value
gene id XLOC_016823
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 47357321 ~ 47367152 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033941
aaaaaaggTTGTATCTTCCGGTTTAAGAGGACtttaaatattgaaaacaaacatcTAAGACGCTACACACACTGCCAAAAGCGACATCTAGATGAATATATACAATATGCTCCACGATTTTCTCTCAATAATAAAACAAGTGCCTGATTATATCGATGTGGATGTGTTTGCACAAACACCAGCTCTGCATTTCACCAGCAGCATCACGTCAACAAATGAGTTTATGCTGAACAGTACAGTGGTGTTAATGAGATTCTGCAGGACCTTTATCTGCAGGGCCTATAGATTAAGAGTGTTTATCACATCACTCAGAGAGCAACTTCATATCAGACCGCATTCCTTTCCAAAAGCGTCTCTCGTGTTGTCATTCTCCATCTTGCTCTTTTGTGAAGCTAGAGTACAAGCTCTGACAGTTGTGAGGATTTGTCGTCGCAAGTCCAACTTCAGCATCAACTTTAAGAAGCGAAACAAGCTGCGTTTAATAACTGGAGACTCCAGCGTGTCCACGACCAAACCTTCAACATCTGAACATAACAGTTAAGTAAAAGTTTGACGGAGTTAAATCAGAAGAAAAGCCTTTTAAACACCATACTGAAGAAAAAGGACTTCAGACATTGACATTCTGAAGTAAACGACGCTTAATATATCCCATACTGCTCCACATCTACACTTCACATCGAGTCTTTGTTGAAATATCAGTGATGGTCATGGACAAATATCgtggcgctatgaacAACCGAACAATGCTCCTAGCTCTTCTGGCAAGGTGCCGACAAGCTATTCTGAAGGAAAAGGAGACAAACCATCAGAATTTCCAAGATAATTCGACAACAACGGCTCCAACCTCCTCGAGTATCACCACAACAAGACGGCAGTCATAAGAAGGATCCATATGAGGAGTTCATGAAGCCCACCGAGTCCTCAAAGGAAAACACAAGTCCAGTCGATGAGAAAATCGACTTTGAGGAGGagaacagtgtgtgaatattcTACTATAtggacattttcttttttttttttttgaagtaaggaattttttacagcatttctgataatacttttttcttctggagaaggtcttatttgttttatttcagctagaataaaagcagttccaATTTTTTTAGACGcattttaaggtgaatattattaaCATCCTCAAGCTGTATTTTTTTAGttctctatagtctacagaacaaagcatcattatacaatgacttgcctaatcacccaaacttgcttaattacctaattaacctagttaagcctttaaatgtcactaagctgtatagaagtgtcttgaaaaatatctagtaaaatattatttactgtcatcatggcaaagataaaataaatccgttattagaaatgagttatttaaactattttgttcacaaatatgttgaaaaaaaatctttgctctgttaaacagaaattgaaaaaaatatatacagtggggctaataatgctgactacAACtttatattgcatgtacagtacacTATATTTTAGACAGAGATTAATACTTTCAAGGGtgcatttgattaaataaaatgagtaaaGACTTTTATACTTTTATTGAAATGAATATTAGAAGTAATTATTTTTAAGTGACACTGAAAAATATGCTTAAATTTCAGCTTTGCATTACAGGAATAATTTCATTGCAACCTTGTACtaatatttatatagtttacctcagattttattatagcattcattcattcattttcttgtcggcttagtccctttattaatccggggtcgccacagtggaatgaaccgccaacttatccataacttagcccttccagccgcaacccatctctgggaaacattcacactcgtacactacgtacaatttagcctacccaattcacctgtaccgcatgtctttggactgtgggggataccggagcacccggaggaaacccacgcgaatgcagggagaacatgcaaactccacacagaaacaacaactgagccgaggtttgacccagtgaccttcttgctgtgaggcgccagtactacctactgcaccactgcatttgcacaaatataatattgtatagcatataccttagattagtcagtattgaagtcaaatctggagataatctagcaaaataacatgctaatggtccaaaaactagtacacccaaatttatttgttatagaaaaatattaaaatataagaaGCAAGGgaagcaaaaaaaattttttttttgaaaagttttgtaaaaattttgaaggttgtaattttttttgcatgaatttaattgcatctttcaatttctaaatatgtttattgactaaaa
>TCONS_00033940
aaaaaaggTTGTATCTTCCGGTTTAAGAGGACtttaaatattgaaaacaaacatcTAAGACGCTACACACACTGCCAAAAGCGACATCTAGATGAATATATACAATATGCTCCACGATTTTCTCTCAATAATAAAACAAGTGCCTGATTATATCGATGTGGATGTGTTTGCACAAACACCAGCTCTGCATTTCACCAGCAGCATCACGTCAACAAATGAGTTTATGCTGAACAGTACAGTGGTGTTAATGAGATTCTGCAGGACCTTTATCTGCAGGGCCTATAGATTAAGAGTGTTTATCACATCACTCAGAGAGCAACTTCATATCAGACCGCATTCCTTTCCAAAAGCGTCTCTCGTGTTGTCATTCTCCATCTTGCTCTTTTGTGAAGCTAGAGTACAAGCTCTGACAGTTGTGAGGATTTGTCGTCGCAAGTCCAACTTCAGCATCAACTTTAAGAAGCGAAACAAGCTGCGTTTAATAACTGGAGACTCCAGCGTGTCCACGACCAAACCTTCAACATCTGAACATAACAGTTAAGTAAAAGTTTGACGGAGTTAAATCAGAAGAAAAGCCTTTTAAACACCATACTGAAGAAAAAGGACTTCAGACATTGACATTCTGAAGTAAACGACGCTTAATATATCCCATACTGCTCCACATCTACACTTCACATCGAGTCTTTGTTGAAATATCAGTGATGGTCATGGACAAATATCCATCGATATGCctctaggtggcgctatgaacAACCGAACAATGCTCCTAGCTCTTCTGGCAAGGTGCCGACAAGCTATTCTGAAGGAAAAGGAGACAAACCATCAGAATTTCCAAGATAATTCGACAACAACGGCTCCAACCTCCTCGAGTATCACCACAACAAGACGGCAGTCATAAGAAGGATCCATATGAGGAGTTCATGAAGCCCACCGAGTCCTCAAAGGAAAACACAAGTCCAGTCGATGAGAAAATCGACTTTGAGGAGGagaacagtgtgtgaatattcTACTATAtggacattttcttttttttttttttgaagtaaggaattttttacagcatttctgataatacttttttcttctggagaaggtcttatttgttttatttcagctagaataaaagcagttccaATTTTTTTAGACGcattttaaggtgaatattattaaCATCCTCAAGCTGTATTTTTTTAGttctctatagtctacagaacaaagcatcattatacaatgacttgcctaatcacccaaacttgcttaattacctaattaacctagttaagcctttaaatgtcactaagctgtatagaagtgtcttgaaaaatatctagtaaaatattatttactgtcatcatggcaaagataaaataaatccgttattagaaatgagttatttaaactattttgttcacaaatatgttgaaaaaaaatctttgctctgttaaacagaaattgaaaaaaatatatacagtggggctaataatgctgactacAACtttatattgcatgtacagtacacTATATTTTAGACAGAGATTAATACTTTCAAGGGtgcatttgattaaataaaatgagtaaaGACTTTTATACTTTTATTGAAATGAATATTAGAAGTAATTATTTTTAAGTGACACTGAAAAATATGCTTAAATTTCAGCTTTGCATTACAGGAATAATTTCATTGCAACCTTGTACtaatatttatatagtttacctcagattttattatagcattcattcattcattttcttgtcggcttagtccctttattaatccggggtcgccacagtggaatgaaccgccaacttatccataacttagcccttccagccgcaacccatctctgggaaacattcacactcgtacactacgtacaatttagcctacccaattcacctgtaccgcatgtctttggactgtgggggataccggagcacccggaggaaacccacgcgaatgcagggagaacatgcaaactccacacagaaacaacaactgagccgaggtttgacccagtgaccttcttgctgtgaggcgccagtactacctactgcaccactgcatttgcacaaatataatattgtatagcatataccttagattagtcagtattgaagtcaaatctggagataatctagcaaaataacatgctaatggtccaaaaactagtacacccaaatttatttgttatagaaaaatattaaaatataagaaGCAAGGgaagcaaaaaaaattttttttttgaaaagttttgtaaaaattttgaaggttgtaattttttttgcatgaatttaattgcatctttcaatttctaaatatgtttattgactaaaa

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:1902036 regulation of hematopoietic stem cell differentiation biological_process
GO:1901532 regulation of hematopoietic progenitor cell differentiation biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:2000736 regulation of stem cell differentiation biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:1903706 regulation of hemopoiesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0048856 anatomical structure development biological_process
GO:0042221 response to chemical biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0071711 basement membrane organization biological_process
GO:0050793 regulation of developmental process biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0022008 neurogenesis biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033941 False 2318 lncRNA 0.36 4 47357321 47367152
TCONS_00033940 True 2335 lncRNA 0.36 4 47357321 47367152

Neighbor

gene id symbol gene type direction distance location
XLOC_016822 BX085193.2 coding downstream 8539 47345041 ~ 47348782 (-)
XLOC_016821 NA coding downstream 12495 47341771 ~ 47344826 (-)
XLOC_016820 FP101908.1 coding downstream 96568 47260637 ~ 47260753 (-)
XLOC_016819 NA coding downstream 257660 47090745 ~ 47099661 (-)
XLOC_016818 si:ch211-226f6.1 coding downstream 317559 47038403 ~ 47039762 (-)
XLOC_016824 pax3a coding upstream 3171 47370323 ~ 47431205 (-)
XLOC_016825 BX085193.1 coding upstream 64935 47432087 ~ 47464836 (-)
XLOC_016826 BX085193.3 coding upstream 174585 47541737 ~ 47545639 (-)
XLOC_016827 ap1s3b coding upstream 220086 47587238 ~ 47620806 (-)
XLOC_016828 cul3a coding upstream 276889 47644041 ~ 47681454 (-)
XLOC_016817 NA non-coding downstream 491759 46863035 ~ 46865562 (-)
XLOC_016829 CU929191.1 non-coding upstream 485817 47852969 ~ 47853084 (-)
XLOC_016834 NA non-coding upstream 619295 47986447 ~ 48010815 (-)
XLOC_016838 NA non-coding upstream 896279 48263431 ~ 48265811 (-)

Expression


Co-expression Network