XLOC_016828 (cul3a)


Basic Information

Item Value
gene id XLOC_016828
gene name cul3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 47644041 ~ 47681454 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032963
CAGTCGTCCGCCATCGCTGTAGAGACAGAGGGAAAGAGTAAGCTACAGGGACTCAAACCTGGGGGGGAAAGAGGGCGAGATTTGTCCGTGTTTCCCCTCAAAACACCCACCCTAACATTTGTTGATGGCATCGCTCCCTAACCCAAACATGTCCAACCTCAAACCCGGCACGAAGAAGGACACCAAGATGCGGATCCGCGCCTTCCCCATGACCATGGATGAGAAGTATGTGAATAACATATGGGATCTTCTGAAGAACGCCATCCAGGAGATCCAGCGAAAGAATAACAGTGGGCTGAGCTTCGAGGAGCTCTACAGGAACGCCTACACCATGGTTCtgcacaaacatggggagaagcTCTACACGGGACTGCGAGAGGTGGTCACCGAACACCTCATCAACAAAGTTCGAGAAGACGTGCTTCACTCGTTAAATAACAATTTCCTGCAGACTTTAAATCAAGCGTGGAATGATCATCAGACTGCCATGGTCATGATTCGAGACATCTTGATGTACATGGACCGTGTGTACGTCCAGCAGAATAATGTGGAGAACGTCTACAATCTGGGTTTGATCATCTTCAGAGATCAGGTTGTGCGGTATGGCTGCATCAGAGATCATCTCCGACAGACTCTGCTGGACATGATCGCTCGAGAGCGCAGAGGAGAGGTGGTCGACAGGGGAGCCATCAGGAATGCCTGTCAGATGCTGATGGTTTTGGGCTTAGAAGGTCGCTCCGTCTACGAAGAGGATTTTGAAATCCCGTTCTTAGACATGTCTGCTGAGTTCTTCCAGATGGAAAGCCAAAAGTTCCTAGCAGAAAACAGTGCCAGTGTCTACATCAAGAAAGTAGAGGCTCGGATAAACGAAGAGATTGAGCGAGTGATGCACTGTCTGGATAAATCGACAGAGGAGCCCATCGTGAAGGTGGTGGAGAGAGAGCTCATCTCCAAACACATGAAGACCATCGTGGAGATGGAGAACTCTGGACTGGTCCACATGCTCAAGAATGGAAAAACAGAAGACCTGGCGTGCATGTATAAGTTATTTGGTCGAGTTCCTAATGGTCTGAAGACAATGTGTGAGTGCATGAGCTGGTACCTCAGAGAGCAGGGGAAAGCACTTGTTTCAGAGGAAGGAGAGGGGAAAAACCCTGTCGACTACATTCAGGGTTTGTTGGACTTAAAGTCTCGCTTCGACCGGTTTCTTCAGGAGTCTTTTAACAATGACAGGCTCTTTAAACAAACTATCGCTGGAGACTTTGAGTATTTCCTCAATCTTAACTCCAGATCGCCAGAGTATCTCTCACTTTTCATAGACGACAAGCTTAAGAAAGGAGTGAAGGGGCTGACAGAGCAAGAGGTGGAGTCCATCCTGGATAAGGCCATGGTTCTGTTCAGGTTCATGCAGGAGAAGGATGTGTTCGAACGTTACTACAAACAGCATCTGGCCAGAAGGCTTTTAACCAATAAGAGCGTTTCAGATGACTCTGAGAAAAATATGATCTCCAAACTAAAGACCGAGTGCGGTTGTCAGTTCACCTCTAAGCTGGAGGGCATGTTTAGAGACATGAGCATTTCTAATACAACTATGGATGAATTCCGCCACCATCTGCAGACATCACAGGTGTCTCTGTGTGGTGTTGATCTCACAGTGAGAGTTCTAACCACTGGTTACTGGCCCACACAGTCGGCCACTCCTAAATGCAACATCCCACCCTCCCCACGTCATGCATTTGAGGTCTTCAGAAGGTTTTATTTGGCCAAGCACAGCGGCAGGCAACTCACACTCCAGCACCACATGGGTTCAGCAGATCTCAATGCCACCTTCTACGGCCCCATCAAGAAGGAGGACGGTTCAGATGTTGGTGTCGGTGGTGCTTTGTTAACAGGCTCAAACACACGGAAGCACATTCTGCAGGTGTCGACCTTCCAGATGACCATCCTCATGCTCTTCAACAACAGAGAGAAGTTCACATTTGAGGAGATCCAGCAGGAGACTGATATCCCCGAGCGTGAGCTGGTCAGGGCCCTGCAGTCTTTGGCCTGCGGAAAACCCACACAGAGAGTGCTCACGAAAGAGCCCAAGAGTAAAGAGATCGAGAGCGGCCACGTGTTTACAGTCAACGACCAGTTTACCTCCAAACTGCACAGAGTCAAAATACAAACAGTTGCTGCTAAGCAAGGCGAGTCAGACCCCGAGCGTAAAGAGACGCGGCAGAAAGTAGACGACGACAGGAAGCATGAAATTGAAGCTGCCATCGTCCGCATTATGAAGTCCAGGAAGAAGATGCAGCACAACGTACTGGTAGCGGAGGTGACCCAGCAGCTGAGGGCACGTTTCTTGCCGAGCCCCGTGGTTATTAAAAAGCGCATTGAAGGACTAATAGAAAGAGAGTATTTGGCCCGGACGCCGGAGGATCGTAAAGTGTACACGTATGTGGCATAGTGGAACACATGTCTGCACAAAGAGACAAGGAGCGAGCAACATAAAGAcaagaaaaattacaaaaaaaaaagattctggaCTGCTCTTCGCATGGACTGACTGGGAAGTTTCTTTTAACTAAAGATGAACTCTGGGTAGCGGACTtcacttaaaaacaaaaagcaaaccgAGAAATCGTAAAGCATTCGATCGGGGAAAATAATCAGGAGGCAAAATAAGAAATCCATAATTgtgttgtagattttttttaattagatcaCTCCCACTCTTATGAAAAACCTCAGCTTATGAATGGATCCAGCTTTCAGTCTTCTCACCGTTTTACCCTTGTAGAGATCAAAACGAAAAAGAATCCCTTGGGAAAATGTGAATGCACTgcacatgttgttgttgtttttttttcaatactgtataaaaggcaaaattattaaaaacccTAACAAAACAGCCAAAACGTGGCTACGGAAATAAGGCGGAAAACGTTCaataaaaaatgttgatattGAAAA

Function

symbol description
cul3a Predicted to enable ubiquitin protein ligase binding activity and ubiquitin-protein transferase activity. Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be part of Cul3-RING ubiquitin ligase complex. Human ortholog(s) of this gene implicated in pseudohypoaldosteronism. Orthologous to human CUL3 (cullin 3).

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0031461 cullin-RING ubiquitin ligase complex cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0031625 ubiquitin protein ligase binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3376 Predicted to enable ubiquitin protein ligase binding activity and ubiquitin-protein transferase activity. Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be part of Cul3-RING ubiquitin ligase complex. Human ortholog(s) of this gene implicated in pseudohypoaldosteronism. Orthologous to human CUL3 (cullin 3).

Ensembl:

ensembl_id ENSDARG00000038967

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032963 True 2958 mRNA 0.47 16 47644041 47681454

Neighbor

gene id symbol gene type direction distance location
XLOC_016827 ap1s3b coding downstream 23235 47587238 ~ 47620806 (-)
XLOC_016826 BX085193.3 coding downstream 98402 47541737 ~ 47545639 (-)
XLOC_016825 BX085193.1 coding downstream 179205 47432087 ~ 47464836 (-)
XLOC_016824 pax3a coding downstream 212836 47370323 ~ 47431205 (-)
XLOC_016823 NA coding downstream 276889 47357321 ~ 47367152 (-)
XLOC_016829 CU929191.1 coding upstream 171515 47852969 ~ 47853084 (-)
XLOC_016830 ftr05 coding upstream 188353 47869807 ~ 47870649 (-)
XLOC_016831 ftr22 coding upstream 219052 47900506 ~ 47904090 (-)
XLOC_016832 ftr24 coding upstream 234750 47916204 ~ 47923803 (-)
XLOC_016833 fzd8b coding upstream 273706 47955160 ~ 47957673 (-)
XLOC_016822 BX085193.2 non-coding downstream 295259 47345041 ~ 47348782 (-)
XLOC_016821 NA non-coding downstream 299215 47341771 ~ 47344826 (-)
XLOC_016834 NA non-coding upstream 304993 47986447 ~ 48010815 (-)
XLOC_016838 NA non-coding upstream 581977 48263431 ~ 48265811 (-)
XLOC_016839 NA non-coding upstream 585890 48267344 ~ 48275543 (-)
XLOC_016842 NA non-coding upstream 713489 48394943 ~ 48396061 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00009299 cul3,LOC104924156,LOC100710156,LOC107099750,LOC106580681 coding CM030126.1 CM030126.1 32155100 ~ 32179663 (-)