XLOC_016839


Basic Information

Item Value
gene id XLOC_016839
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 48267344 ~ 48275543 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033409
ATGCGCACTGTTTGGATTGGAGCGGTTTCACTCTGCGATAAAGTATTTAAGCTCAACGCATGCAGCTTGTCACTCAGGTTGTTTGCCAGACGACCATCGCGTGCGAGCATGAACACCTCAAGATTTTCATGTTGACAAGTGTGAGCCGAGATAAAGAAGAATGAAGAATCAGAAGAAATTACGGGATTGTAAGTACAAGTTACAATTAAAATGCACAGGACAACTGATGCGATGGCGTATTTTTGTAGGCCACTCTAGAAGTTAGCATCACTCACGTTTCCTTAAATAAAAACTTCTATTTATTTAactttggatgttctccccgtgttcgcgtggggtTTCCTCTGAgcgctctggttttccccacaagtccaaagacatgaggtataggtgaattgggtaagctaaattgtccgtagtgaataagtgtgaataagagtgtatggatgtttccctgtgaagggttgcagctagaagggcatccgctgtgtgaaacatatgctggataagttggtggttcatttcactgtggggaccctggattagtaaagggactatgccattttttaaaatgaattattattattattgttattattatcattattattattattattactattattattattattatcattattattattat
>TCONS_00033408
ATGCGCACTGTTTGGATTGGAGCGGTTTCACTCTGGTAAAACAAGATACTTTAGATGGAAGATGGAGAACTAAAATATATTGATGAACTCAATATTTCccaattattcattcatacactGACTGCAGCAAATCTTCTATCGTTTGTCAGCGATAAAGTATTTAAGCTCAACGCATGCAGCTTGTCACTCAGGTTGTTTGCCAGACGACCATCGCGTGCGAGCATGAACACCTCAAGATTTTCATGTTGACAAGTGTGAGCCGAGATAAAGAAGAATGAAGAATCAGAAGAAATTACGGGATTGTAAGTACAAGTTACAATTAAAATGCACAGGACAACTGATGCGATGGCGTATTTTTGTAGGCCACTCTAGAAGTTAGCATCACTCACGTTTCCTTAAATAAAAACTTCTATTTATTTAactttggatgttctccccgtgttcgcgtggggtTTCCTCTGAgcgctctggttttccccacaagtccaaagacatgaggtataggtgaattgggtaagctaaattgtccgtagtgaataagtgtgaataagagtgtatggatgtttccctgtgaagggttgcagctagaagggcatccgctgtgtgaaacatatgctggataagttggtggttcatttcactgtggggaccctggattagtaaagggactatgccattttttaaaatgaattattattattattgttattattatcattattattattattattactattattattattattatcattattattattat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033409 False 655 lncRNA 0.38 3 48267344 48275543
TCONS_00033408 True 769 lncRNA 0.37 2 48267344 48275543

Neighbor

gene id symbol gene type direction distance location
XLOC_016838 NA coding downstream 1533 48263431 ~ 48265811 (-)
XLOC_016837 gigyf2 coding downstream 11501 48203278 ~ 48255843 (-)
XLOC_016836 snorc coding downstream 71252 48182604 ~ 48196092 (-)
XLOC_016835 pfkpb coding downstream 95903 48119494 ~ 48171441 (-)
XLOC_016834 NA coding downstream 256529 47986447 ~ 48010815 (-)
XLOC_016840 itm2cb coding upstream 8921 48284464 ~ 48298985 (-)
XLOC_016841 per2 coding upstream 34057 48309600 ~ 48375342 (-)
XLOC_016842 NA coding upstream 119400 48394943 ~ 48396061 (-)
XLOC_016843 NA coding upstream 129501 48405044 ~ 48406205 (-)
XLOC_016844 si:ch211-195j11.27 coding upstream 138403 48413946 ~ 48415396 (-)
XLOC_016829 CU929191.1 non-coding downstream 414260 47852969 ~ 47853084 (-)
XLOC_016826 BX085193.3 non-coding downstream 721705 47541737 ~ 47545639 (-)
XLOC_016825 BX085193.1 non-coding downstream 802508 47432087 ~ 47464836 (-)
XLOC_016845 NA non-coding upstream 142847 48418390 ~ 48423133 (-)
XLOC_016852 CR381673.3 non-coding upstream 289287 48564830 ~ 48564946 (-)
XLOC_016853 NA non-coding upstream 359008 48634551 ~ 48635580 (-)

Expression


Co-expression Network