RNA id: TCONS_00033409


Basic Information

Item Value
RNA id TCONS_00033409
length 655
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id XLOC_016839
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 48267344 ~ 48275543 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCGCACTGTTTGGATTGGAGCGGTTTCACTCTGCGATAAAGTATTTAAGCTCAACGCATGCAGCTTGTCACTCAGGTTGTTTGCCAGACGACCATCGCGTGCGAGCATGAACACCTCAAGATTTTCATGTTGACAAGTGTGAGCCGAGATAAAGAAGAATGAAGAATCAGAAGAAATTACGGGATTGTAAGTACAAGTTACAATTAAAATGCACAGGACAACTGATGCGATGGCGTATTTTTGTAGGCCACTCTAGAAGTTAGCATCACTCACGTTTCCTTAAATAAAAACTTCTATTTATTTAactttggatgttctccccgtgttcgcgtggggtTTCCTCTGAgcgctctggttttccccacaagtccaaagacatgaggtataggtgaattgggtaagctaaattgtccgtagtgaataagtgtgaataagagtgtatggatgtttccctgtgaagggttgcagctagaagggcatccgctgtgtgaaacatatgctggataagttggtggttcatttcactgtggggaccctggattagtaaagggactatgccattttttaaaatgaattattattattattgttattattatcattattattattattattactattattattattattatcattattattattat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033947 lncRNA downstream 1533 48263431 ~ 48265811 (-) True XLOC_016838
TCONS_00033946 lncRNA downstream 110107 48142322 ~ 48157237 (-) False XLOC_016835
TCONS_00032975 lncRNA downstream 122054 48142322 ~ 48145290 (-) False XLOC_016835
TCONS_00033945 lncRNA downstream 256529 47986447 ~ 48010815 (-) False XLOC_016834
TCONS_00033944 lncRNA downstream 278746 47986447 ~ 47988598 (-) False XLOC_016834
TCONS_00033948 lncRNA upstream 119400 48394943 ~ 48395524 (-) False XLOC_016842
TCONS_00033949 lncRNA upstream 129501 48405044 ~ 48406203 (-) False XLOC_016843
TCONS_00033410 lncRNA upstream 142847 48418390 ~ 48423133 (-) True XLOC_016845
TCONS_00033950 lncRNA upstream 359008 48634551 ~ 48635576 (-) False XLOC_016853
TCONS_00033951 lncRNA upstream 359008 48634551 ~ 48635580 (-) True XLOC_016853
TCONS_00032978 mRNA downstream 11501 48203278 ~ 48255843 (-) True XLOC_016837
TCONS_00032977 mRNA downstream 71252 48182604 ~ 48196092 (-) True XLOC_016836
TCONS_00032972 mRNA downstream 95903 48119494 ~ 48171441 (-) False XLOC_016835
TCONS_00032979 mRNA upstream 8921 48284464 ~ 48298985 (-) True XLOC_016840
TCONS_00032980 mRNA upstream 34057 48309600 ~ 48375342 (-) False XLOC_016841
TCONS_00032981 mRNA upstream 34058 48309601 ~ 48356787 (-) True XLOC_016841
TCONS_00032982 mRNA upstream 119945 48395488 ~ 48396061 (-) True XLOC_016842
TCONS_00032984 mRNA upstream 138403 48413946 ~ 48415396 (-) True XLOC_016844
TCONS_00032976 other downstream 110107 48145089 ~ 48157237 (-) True XLOC_016835
TCONS_00032964 other downstream 414260 47852969 ~ 47853084 (-) True XLOC_016829
TCONS_00032961 other downstream 721705 47541737 ~ 47545639 (-) True XLOC_016826
TCONS_00032960 other downstream 802508 47432087 ~ 47464836 (-) True XLOC_016825
TCONS_00032957 other downstream 918568 47348088 ~ 47348776 (-) True XLOC_016822
TCONS_00032983 other upstream 129729 48405272 ~ 48406205 (-) True XLOC_016843
TCONS_00032991 other upstream 289287 48564830 ~ 48564946 (-) True XLOC_016852
TCONS_00032992 other upstream 471140 48746683 ~ 48746812 (-) True XLOC_016857
TCONS_00033002 other upstream 1391213 49666756 ~ 49667049 (-) True XLOC_016868
TCONS_00033003 other upstream 1492035 49767578 ~ 49769552 (-) True XLOC_016869

Expression Profile

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