RNA id: TCONS_00032978


Basic Information

Item Value
RNA id TCONS_00032978
length 4696
RNA type mRNA
GC content 0.51
exon number 29
gene id XLOC_016837
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 48203278 ~ 48255843 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCTTGTGGATACGAAACGAGAGACGCCACTCGCACACAAACTCAGCACTGTCAGTAAAAGCAGAGaCTTTCAAGGAAAATGGCGGAAACCCAGACACTCAACTTTGGGCCAGAATGGCTCCGTGCTCTGGCTGGTGGGGTGGGCAGCAGCATTGTGGCCTCCCCTCCGCTCTCGCCTGCATTGCCAAAGTATAAACTTGCAGACTATCGCTACGGGAGAGAAGAGATGCTAGCACTTTATGTAAAGGATAACATGATTCCGGTAGATCTTCATGATAAGGAATTCCTACCTATTTTACAAGAGGAGCCCCTGCCACCTTTGGCATTAGTCCCTTTTACAGAGGAGGAACAGAGAAATTTCTCCATGTCTGTAAACAGTGCAGCAGTTCTCCGTCTGACAGGAAGGGGGGGAGGGACGGTGGCAGGGGCACCTAGAGGCCGAAGTTCTTCACGAGGGCGAGGGAGAGGCAGAGGAGATGGTTTTTACCAAAGAAGTTTTGATGATGTGGAAGGAGGTTTCGGTCGTGGAGGGAGAGAGATGCATCGCTCCCAGAGTTGGGAGGAGAGGGGAGACAGAAGGTTTGAAAAGCCAGGTCGAAAAGATCCAGATGGAGCACCAGCCCATTTTCCACTCAATCACATAAGGGCAAACTATGAGGACCCTGCTGCAGTGAATGCCCGAAAGTTCATTCATGCAGAGTGTGACAACTGGCGCACCACTCGAGATGAGCTGAATGGAGAGGAGGATGATAACGGATGGAGGCTTGCAGGCGCTCGTCGGGAAAATGAGCGATGGTGTCCTCCAAGTCCAGATGGTCCACGATCAGCAGGGTGGCGGGAACACCCAGATCAACGTCGACGCTTTGGTTTTGGGGATGAGGAACGCAGTGGTTACCGTAGGCCTCGGTCGGGCAGCGGGAGCGCAGAGGAGGAGAGGGACAGTTTACCAGAATGGTGTCTGGAAGATGCAGAGGAGGAGACAGGGACGTTTGACTCCTCAGGGGCCTTCCTCTCACTTAAGGTGAGGGCGCTGGAAAAAGCTCCTAAGGAGCCAATCCTGGAAGAGGCGGAGCTGGACTTCCGGCCATTGGAGGAGAATGACGAATATGCAGAAAAGGATGACAGTGAAACTGAACAAACCAAAGATACTGACACAAATACTAGGCACGAAAGTGATCGAAATGAAGaaaactgtaaatcAGAAGAGCCGTCGCCAGTTGCGGTACCATTTTCAGCAGTAGTTACGCCTCCCAAAGCCACCACCCCTGCACCCATTCAGCCTGTACACCTAGAAAAAGCTGAAGATAAGGAGAGACCGTCAGAGAGAACAACATTACCAGAAATCAGACATGAACTGAGTAAAGCACCACTACACACAGCCCTATCTAACAGCATTGTGGAAGCCATTTCCATACCGCATGTCGCAAACAAACTCCCAGATCTTCCGGTCCCAGCGCCTTCAGTTCTGCCTGTCAAGTCAGTGCCCCCTCAATCCCAACAGGTCAAGCCTATAGAGATGCCAGTGTCAGTTCCTCCTGCTCTGCTACGCTCCACAGGCAGTGTGGGTCCTATCAGTCGACCCTCTGCCCTGCCATCGGACTTGGATGAGGATGAGGGACTCAAGCACTTTGAGCAGGAAGCTGAGAAAATGGTGGCGTACCTCCAGGATGGTGGCGTAGATGATGAACGTTTGGCCTCTAAAATTGGACCCAAACCATCAGCTCTTCCAATCACAAATGAAGCTGCATTCAAATGGTTTTACAAAGATCCGCAGGGGGAAATCCAAGGACCATTTAATAATCAGGAGATGTCTGAGTGGTTTCAGGCGGGCTATTTCACCATGACCTTGCAGGTAAAGCGAGGATGCGACGAGATGTTCCAGCCTCTGGGCGAGATGATTAAGTTGTGGGGACGAGTGCCCTTTACACCGGGCCCGACACTACCTCCCATACTGGGAGATGCAGATCAAGAAAGGATGAAGAGACAACAGGAGATTAATGCTCTAAATATGTATCAGCTACAGCAGATGCAATATCAGTATTTACTCAGGCAACAATATGCTCTGCAGCAGAAAGTGTTAAActctgctcctcctcctcctccaccaccacAGCAGCAGCTCAATCTTCTTCTCCATCAGGCGCTGAAGATCAGAACTCCTGAGCCGCAGCAGAGCCTCTTACCTCCCGTCACACGCTCCATGTCGGTTCCAGACTCGGGTTCTGTTTGGGAAATGCAGAACCCGTCCACTCAGGCATCCTGTTCTCCAAACATGCAGCCCGCCGCTCCCAGCAcTTGGGAAGGGAGTAGCGTATGGGATCTGCCACTAGACAATATGCCTCAAGCGTCTTCCATTGAACAGCTGCAGCTGGAGAAAGCCAAAGCTTTGAAGCTGGAGATGGAGAGACGGGAGGCAGAGCTTCGGGCCAAAAGGGAAGAAGAGGAGAGGAAGCGTTTGGAAGAGGCTCTGCGTGCGAGacaagaggaagagaggaagcgTTTAGAGGAAGAAGAGCTGGCACGACGCAAGCAGGAGGAGGCTCTGAAGAGACAGCGGGAGCAGGAGGAGGCGCAGCGGAGGAAAAAGGAAGAGGAGGAACGGTTAGCTCAGGAGGAGGCTCTCCGGCGACTGGAGGAGCGGAGGAGAGAAGAAGAGGAGAGGAGACAAAGGGAAGAATTCCTCCGCAAACAGCAGGAAGAGGAGCGGAGGAAGCAGGAAGAACTGGAAGCTCAGAGGCGGCGTGAGGAAGAGAAGAGGCTGGAGGAGGAGGCTGCGGCCGCTGCAGCAGCACTGCTCAGACAACAGCAGGAGGAGCAGAAGAAGAGAGAGCAGGAGGCGCAGAGACAGCAGGAGCTGCAGAGACAGAGACAGCAGCAACAGGAGGCACTCCGACgactccagcagcagcagcaacaacagcagCTCGCACAAATGAAGCTACCTTCATCCTCAAAGTGGGGTCAGCAGTCGACCACAGCAAACAGTCTCTCACAGTCTCAAAATGCTCTTTCGCTCGCTGAGATCCAGAAACTGGAGGAGGAGAGAGAACGACAGACTCGAGAAGAGCAGAGACGTCAGCAGCAGGAGCTCCAGCGGGTCCAGCAGCAGCAGCCTCAGACCAAGCTCCCTGGCTGGGGCAGTGTGGCTAAGCAGCCCATGGCCACTAAATCCCTGTTGGAGATCCAGAGAGAGGAAGCACAGCAGATGAAGCAGCGGAAagatcagcagcagcagcaacaacaacaacaacaaccacctcCACAGCCTCAGCCTCAGCAACATTCAACCAACACCCAGCAAAATCGCACACAAAACCGGGCGGCCATCAATACGTCAGTGTGGGGTTCTGTCAATAATGTGAGCTCAAACTGGATGATGGACAGCAGTGTATGGGGCGACACGCAGAACTCTAATATTGGCTTCTGGGATGAAGCAGTAAAGGAGGCCGCTCCACCTCAAACCACTCGCAAGAGCCACACTCCGAAAAACAAGGGCAACGCTAACCTCAGTAATAGCAGCAGCGGTAAAGCCAGTAAAAAGGTGGAAGAGGAGGAGAAGCTACTGAAACTGTTCCAGGGAGCCAATAAGAACCAGGACGGCTTTATGCAGTGGTGTGAACAGACCCTGCACACTCTCAACACAGCCAATAACCTCGATGTTCCCACTTTTGCATCGTTCCTGAAGGAAGTGGACTCTCCGTATGAGGTGCACGATTATGTACGAGCTTATCTGGGTGACACTCCACAGGCCAAGGACTTCGCCAAGCAGTTCCTGGAGCGCCGTGCCAAACAGAACGACAACCAGCAGAAACCTCAGCAGGGCCAGCAACAAAAACAGCAGGAGTCGGTGTGGGGAATAAGAGAAGTGCCACAGTCAGTCCtgcttcaacaacaacaacaacaacaattacagcagcagcaacagcagcgGTTTGAAACGGTCACTTCCggcaagaagaagaagaaacagaaGATGGTACGAGCCGACCCAAGCCTTCTAGGTTTTTCTGTCAATGCCTCCTCTGAGAGACTCAATATGGGCGAGATCGAGACGGTTGAAGACTTTTGAGAGCTGCTGATCTTCAGGCTCCCTCTACTGACTGTTTTCCTGCTCAACAGCTGCCCTCAGATTCCCCTCACTaccttttttttctccttttttttttttaaatcctcaaTTTCTGATTTGGAAGCTATTCGGGGCAGCAAGTTTTTCTTCCTCCCTAATCCAGAGGAAACCCCAGTTGCAATAACAGCGCTGCCCCACGGCCATGAAAATatccccaaaataaaaataagagagCGAGGTTTGCTTCGGCAGGAGAGGAGATTCTGCTCGACATCATGCTCACGATTATCTCAGTCCCACGTTTCTTTAAGTGTCAATAGACGGAGCGCGGAGGAAGCATATTATGTATGGTCCCCATCATAACTtccttcatattttttttttatttattggttcCTGccctcactcttttagcgttttccGTTTTCTTCCCTCCTCTCCCGCTTTGCTGCCCCGGACGTCgacaaaacaaaataagactCGAAGAAATGTCAAATGAACACGGTCCTGTTTTAAGGACATGTTTGAAAGTTCCAGACAGTTATCCATTTCTTTGTAAAATATTAGGCTGTTTAAAGAATAAACTTTCGATTCTGCATCTGTATTATAATATATGGAAATGATGAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050706-185 Predicted to be involved in insulin-like growth factor receptor signaling pathway. Predicted to be active in several cellular components, including cytosol; perikaryon; and proximal dendrite. Is expressed in blastoderm; blastodisc; brain; and somite. Used to study schizophrenia. Human ortholog(s) of this gene implicated in Parkinson's disease. Orthologous to human GIGYF2 (GRB10 interacting GYF protein 2).

Ensembl:

ensembl_id ENSDART00000056277

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033946 lncRNA downstream 46041 48142322 ~ 48157237 (-) False XLOC_016835
TCONS_00032975 lncRNA downstream 57988 48142322 ~ 48145290 (-) False XLOC_016835
TCONS_00033945 lncRNA downstream 192463 47986447 ~ 48010815 (-) False XLOC_016834
TCONS_00033944 lncRNA downstream 214680 47986447 ~ 47988598 (-) False XLOC_016834
TCONS_00033947 lncRNA upstream 7588 48263431 ~ 48265811 (-) True XLOC_016838
TCONS_00033409 lncRNA upstream 11501 48267344 ~ 48275543 (-) False XLOC_016839
TCONS_00033408 lncRNA upstream 11501 48267344 ~ 48275543 (-) True XLOC_016839
TCONS_00033948 lncRNA upstream 139100 48394943 ~ 48395524 (-) False XLOC_016842
TCONS_00033949 lncRNA upstream 149201 48405044 ~ 48406203 (-) False XLOC_016843
TCONS_00032977 mRNA downstream 7186 48182604 ~ 48196092 (-) True XLOC_016836
TCONS_00032972 mRNA downstream 31837 48119494 ~ 48171441 (-) False XLOC_016835
TCONS_00032973 mRNA downstream 32166 48121686 ~ 48171112 (-) False XLOC_016835
TCONS_00032974 mRNA downstream 49333 48127566 ~ 48153945 (-) False XLOC_016835
TCONS_00032969 mRNA downstream 245605 47955160 ~ 47957673 (-) True XLOC_016833
TCONS_00032979 mRNA upstream 28621 48284464 ~ 48298985 (-) True XLOC_016840
TCONS_00032980 mRNA upstream 53757 48309600 ~ 48375342 (-) False XLOC_016841
TCONS_00032981 mRNA upstream 53758 48309601 ~ 48356787 (-) True XLOC_016841
TCONS_00032982 mRNA upstream 139645 48395488 ~ 48396061 (-) True XLOC_016842
TCONS_00032984 mRNA upstream 158103 48413946 ~ 48415396 (-) True XLOC_016844
TCONS_00032976 other downstream 46041 48145089 ~ 48157237 (-) True XLOC_016835
TCONS_00032964 other downstream 350194 47852969 ~ 47853084 (-) True XLOC_016829
TCONS_00032961 other downstream 657639 47541737 ~ 47545639 (-) True XLOC_016826
TCONS_00032960 other downstream 738442 47432087 ~ 47464836 (-) True XLOC_016825
TCONS_00032957 other downstream 854502 47348088 ~ 47348776 (-) True XLOC_016822
TCONS_00032983 other upstream 149429 48405272 ~ 48406205 (-) True XLOC_016843
TCONS_00032991 other upstream 308987 48564830 ~ 48564946 (-) True XLOC_016852
TCONS_00032992 other upstream 490840 48746683 ~ 48746812 (-) True XLOC_016857
TCONS_00033002 other upstream 1410913 49666756 ~ 49667049 (-) True XLOC_016868
TCONS_00033003 other upstream 1511735 49767578 ~ 49769552 (-) True XLOC_016869

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000118_00445906_00468559.mRNA True 3629 mRNA 0.52 25 CI01000118 445706 ~ 468559 (-)
bowfin (Amia calva) AMCG00009521 True 4084 mRNA 0.57 28 CM030126.1 40121463 ~ 40157448 (-)