RNA id: TCONS_00032976


Basic Information

Item Value
RNA id TCONS_00032976
length 639
RNA type processed_transcript
GC content 0.51
exon number 6
gene id XLOC_016835
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 48119494 ~ 48171441 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAAACGGCTTAATATCATCATAGTAGCTGAAGGTGCGATAGACCAAAACAACAAGCCCATAACCACAGACCATATAAAGGACCTGGTCGTGAGCCGGTTGGGGTTTGACACTCGGGTCACCATTCTGGGCCACGTCCAGAGAGGAGGAACCCCCTCTGCCTTTGACCGGATTCTGGCCAGTCGCATGGGAGTGGAGGCCGTTTTGGCTCTTCTCGAAGCGTCTCCTGGTACTCCAGCATGTGTGGTGTCTCTGTGTGGAAATCAGGCGGTCAGGGTCCCTCTGATGGAGTGCGTTCAGATGACTCAGGAGGTTCAAAAGGCCATGGATGAAAAGAGATTCGAAGAAGCCGTGAAGCTGCGTGGCAGAAGTTTCGAAAACAACCTGAACACCTACAAACTCTTGTCTCACCGCAAAATTGACACAGAGCTTCCACATAGTTCGTTTAATGTGGCCGTGTTGAATGTTGGCGCTCCTGCGGCTGGTATGAATGCTGCCGTGCGCTCAGCAGTTAGAGTCGGCATCACTGAAGGACACACCATGTTTGCTGTGAGCGACGGGTTTGAGGGCTTCTACAAAGGACAGGTAATGCAGTAGTAGGTAATCGCAGAAGCAGACCTTTGGCCTTTTTATTGATGAT

Function

GO:

id name namespace
GO:0030388 fructose 1,6-bisphosphate metabolic process biological_process
GO:0008152 metabolic process biological_process
GO:0006096 glycolytic process biological_process
GO:0051289 protein homotetramerization biological_process
GO:0016310 phosphorylation biological_process
GO:0006002 fructose 6-phosphate metabolic process biological_process
GO:0006007 glucose catabolic process biological_process
GO:0061621 canonical glycolysis biological_process
GO:0005945 6-phosphofructokinase complex cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003872 6-phosphofructokinase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0042802 identical protein binding molecular_function
GO:0016208 AMP binding molecular_function
GO:0070095 fructose-6-phosphate binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0048029 monosaccharide binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-634 Predicted to enable several functions, including 6-phosphofructokinase activity; anion binding activity; and identical protein binding activity. Predicted to be involved in canonical glycolysis; fructose 1,6-bisphosphate metabolic process; and fructose 6-phosphate metabolic process. Predicted to act upstream of or within glycolytic process. Predicted to be located in cytoplasm. Predicted to be part of 6-phosphofructokinase complex. Predicted to be active in membrane. Orthologous to human PFKP (phosphofructokinase, platelet).

Ensembl:

ensembl_id ENSDART00000141152

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033945 lncRNA downstream 134274 47986447 ~ 48010815 (-) False XLOC_016834
TCONS_00033944 lncRNA downstream 156491 47986447 ~ 47988598 (-) False XLOC_016834
TCONS_00033942 lncRNA downstream 156547 47986447 ~ 47988542 (-) False XLOC_016834
TCONS_00033943 lncRNA downstream 156547 47986447 ~ 47988542 (-) False XLOC_016834
TCONS_00032970 lncRNA downstream 156547 47986447 ~ 47988542 (-) False XLOC_016834
TCONS_00033947 lncRNA upstream 106194 48263431 ~ 48265811 (-) True XLOC_016838
TCONS_00033409 lncRNA upstream 110107 48267344 ~ 48275543 (-) False XLOC_016839
TCONS_00033408 lncRNA upstream 110107 48267344 ~ 48275543 (-) True XLOC_016839
TCONS_00033948 lncRNA upstream 237706 48394943 ~ 48395524 (-) False XLOC_016842
TCONS_00033949 lncRNA upstream 247807 48405044 ~ 48406203 (-) False XLOC_016843
TCONS_00032969 mRNA downstream 187416 47955160 ~ 47957673 (-) True XLOC_016833
TCONS_00032968 mRNA downstream 221286 47916204 ~ 47923803 (-) True XLOC_016832
TCONS_00032966 mRNA downstream 240999 47900506 ~ 47904090 (-) False XLOC_016831
TCONS_00032967 mRNA downstream 241046 47903284 ~ 47904043 (-) True XLOC_016831
TCONS_00032965 mRNA downstream 274440 47869807 ~ 47870649 (-) True XLOC_016830
TCONS_00032977 mRNA upstream 25367 48182604 ~ 48196092 (-) True XLOC_016836
TCONS_00032978 mRNA upstream 46041 48203278 ~ 48255843 (-) True XLOC_016837
TCONS_00032979 mRNA upstream 127227 48284464 ~ 48298985 (-) True XLOC_016840
TCONS_00032980 mRNA upstream 152363 48309600 ~ 48375342 (-) False XLOC_016841
TCONS_00032981 mRNA upstream 152364 48309601 ~ 48356787 (-) True XLOC_016841
TCONS_00032964 other downstream 292005 47852969 ~ 47853084 (-) True XLOC_016829
TCONS_00032961 other downstream 599450 47541737 ~ 47545639 (-) True XLOC_016826
TCONS_00032960 other downstream 680253 47432087 ~ 47464836 (-) True XLOC_016825
TCONS_00032957 other downstream 796313 47348088 ~ 47348776 (-) True XLOC_016822
TCONS_00032955 other downstream 796318 47347109 ~ 47348771 (-) False XLOC_016822
TCONS_00032983 other upstream 248035 48405272 ~ 48406205 (-) True XLOC_016843
TCONS_00032991 other upstream 407593 48564830 ~ 48564946 (-) True XLOC_016852
TCONS_00032992 other upstream 589446 48746683 ~ 48746812 (-) True XLOC_016857
TCONS_00033002 other upstream 1509519 49666756 ~ 49667049 (-) True XLOC_016868
TCONS_00033003 other upstream 1610341 49767578 ~ 49769552 (-) True XLOC_016869

Expression Profile

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