RNA id: TCONS_00033003


Basic Information

Item Value
RNA id TCONS_00033003
length 536
RNA type processed_transcript
GC content 0.52
exon number 2
gene id XLOC_016869
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 49767578 ~ 49769552 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTGGCGCGCCAAGAGCAGGCATTGTGGGCGCTACTAAGTGGAAATATTCTGTGCGTGGGGGGTGGATGAGGCCGTAGCGGAGACGTGCTCTAGCTGTCATGGCGAATTGGCCGATTGTGGCGCTTCGCCTGTAAAGCGGTGGCCTGGCGCTCGCTTGATCTGGGCCAGTGGTTTCCAACTGGGGAGCGGCTCAGGTTTGTTGCCGGTGTCTGGAAGAGCGGCAGCGTGGCGGCCTAAGTTaagacagcggcctctgttgaTATGCTCTGCCGAGTGCTGATGCGCTGGACGTCAGCTTGGAGTTTACAAGAGGAGCCGTGTCATCCTCATGGAAATTTGCTGTTTGGACATAGTTACAGCGATTGGATGTGccaatgctaaagtcgtgagatgctgcaggtaagacagctttggtatatataggagttgctcaagaactgatttgatgatgggataattgtcaatgacgtattcgatactgaaacttctgcgcatgctcctcccgaaatttgtttacaaaacatcactttgaga

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000148343

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032999 lncRNA downstream 211014 49555790 ~ 49556564 (-) True XLOC_016866
TCONS_00033955 lncRNA downstream 245301 49521249 ~ 49522277 (-) True XLOC_016865
TCONS_00033954 lncRNA downstream 313125 49446787 ~ 49454453 (-) True XLOC_016864
TCONS_00033953 lncRNA downstream 419374 49341587 ~ 49348204 (-) True XLOC_016862
TCONS_00033952 lncRNA downstream 1023584 48739542 ~ 48743994 (-) True XLOC_016856
TCONS_00033004 lncRNA upstream 22655 49792207 ~ 49793005 (-) False XLOC_016870
TCONS_00033005 lncRNA upstream 22655 49792207 ~ 49793317 (-) False XLOC_016870
TCONS_00033956 lncRNA upstream 22655 49792207 ~ 49793420 (-) True XLOC_016870
TCONS_00033008 lncRNA upstream 75332 49844884 ~ 49851884 (-) True XLOC_016871
TCONS_00033013 lncRNA upstream 335259 50104811 ~ 50106618 (-) False XLOC_016875
TCONS_00033001 mRNA downstream 140475 49612868 ~ 49627103 (-) True XLOC_016867
TCONS_00033000 mRNA downstream 140479 49608796 ~ 49627099 (-) False XLOC_016867
TCONS_00032998 mRNA downstream 209646 49555768 ~ 49557932 (-) False XLOC_016866
TCONS_00032997 mRNA downstream 397536 49366684 ~ 49370042 (-) True XLOC_016863
TCONS_00032996 mRNA downstream 736275 49007592 ~ 49031303 (-) True XLOC_016861
TCONS_00033006 mRNA upstream 75078 49844630 ~ 49860723 (-) False XLOC_016871
TCONS_00033007 mRNA upstream 75182 49844734 ~ 49854432 (-) False XLOC_016871
TCONS_00033009 mRNA upstream 115144 49884696 ~ 49978227 (-) True XLOC_016872
TCONS_00033010 mRNA upstream 214607 49984159 ~ 49985351 (-) True XLOC_016873
TCONS_00033011 mRNA upstream 217536 49987088 ~ 50053006 (-) False XLOC_016874
TCONS_00033002 other downstream 100529 49666756 ~ 49667049 (-) True XLOC_016868
TCONS_00032992 other downstream 1020766 48746683 ~ 48746812 (-) True XLOC_016857
TCONS_00032991 other downstream 1202632 48564830 ~ 48564946 (-) True XLOC_016852
TCONS_00032983 other downstream 1361373 48405272 ~ 48406205 (-) True XLOC_016843
TCONS_00032976 other downstream 1610341 48145089 ~ 48157237 (-) True XLOC_016835
TCONS_00033024 other upstream 703874 50473426 ~ 50473542 (-) True XLOC_016880
TCONS_00033026 other upstream 939814 50709366 ~ 50709482 (-) True XLOC_016882
TCONS_00033049 other upstream 1645951 51415503 ~ 51415811 (-) True XLOC_016902
TCONS_00033050 other upstream 1659621 51429173 ~ 51429490 (-) True XLOC_016903
TCONS_00033052 other upstream 1688561 51458113 ~ 51458228 (-) True XLOC_016905

Expression Profile

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