XLOC_016864


Basic Information

Item Value
gene id XLOC_016864
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 49446787 ~ 49454453 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033954
ttctttttaaagaataaaatccATCtttagtctttatttatttattcatactcCGTGTCTTATAATTCAGGTTGAAAGAACCTGTAATAGTACATTAGCAGAAAGAGGAAAGGTCTTTGACACTTTGTGGTTGAcattcacaaaaaatatatatatatatatttaaatatagctaCAGGACACAGTGATCAAGAATACGGGTCTCCTATTCGGTGCAAAGTGTGTGCGTTATGtatgtgaacgtgtgtgtgtgtgtaatcggCAGAGGATACTGGTGACCAGCAATCTCCCTGAGAATAAAtcgtctttttgtgtgtgtgtgaaacacacacgcaaacatcTCTTCTATGAAAAGACAAAAGAATAAACATGGATTCGTAGATACAAACGGGTGACTGGATGAGACGAACACAATCTGAGGAAGGCATGCGTCAAAGGCCTAGAGGTGGGGATTGTCAAAACAACACATCGAAAAAAGCACATCACACAGACAGAAGTCCCATATTTCTCATTCTTCTGAACCGAGGGCAGGCCACGTGTCTTGACGAGAGCGGTTTATAATGACAAAAGGCAAATTTCCTCTTGTTCGTTAAAAAACTGAGACACGTTTCACCTTTCGAACAGAATACAAGCTCATTCACTCATTGGGAATTGTGAAAAACAGTGTGTTGGATGTTTAGTTGTACTATAAACAACACCGTGAACCTGGAAAAATCTGATGCACAGAAAACAGCATGGAAGGAAGCGGTCCGGACCACAGAAATAGACAAGAGAGGTGATCaacaatatacaaaataatacaacAGAAAACTACAGCCGTGCTCCAGCAAGAGTGGCGTTAATCTCTTATGTTTTGCTCTCCTTTTTTTGTCATCCTCCAGTTTGTGAAGTCCACCAGACTGAACAAGAGTCTTTTTTCTCATCATGCCCAGCTGAAATAACCGTCCGTGTCCTGTGAAAGTTGGATCCGGAGTAGCTCCACAACGAAATGGGCAAAAATAAGTCCGATGCCATTTCGTTTCTTTCCATTTGGATGTCCTGGAGGAACTCAAAAGCCGGCTGATCTGGGAAGTTGATCTCGCTGCCGAACACTTCCCTGTACAGAGGAGGGAAACTGTAGGCCG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033954 True 1124 lncRNA 0.41 2 49446787 49454453

Neighbor

gene id symbol gene type direction distance location
XLOC_016863 CT583662.1 coding downstream 76745 49366684 ~ 49370042 (-)
XLOC_016862 NA coding downstream 98583 49341587 ~ 49348204 (-)
XLOC_016861 cdc34b coding downstream 415484 49007592 ~ 49031303 (-)
XLOC_016860 kcnj9 coding downstream 480356 48950787 ~ 48966431 (-)
XLOC_016859 svilb coding downstream 620080 48817958 ~ 48826707 (-)
XLOC_016865 NA coding upstream 66796 49521249 ~ 49522277 (-)
XLOC_016866 si:ch211-209f23.3 coding upstream 101315 49555768 ~ 49557932 (-)
XLOC_016867 cactin coding upstream 154343 49608796 ~ 49627103 (-)
XLOC_016868 BX323861.2 coding upstream 212303 49666756 ~ 49667049 (-)
XLOC_016869 BX284666.2 coding upstream 313125 49767578 ~ 49769552 (-)
XLOC_016857 CABZ01044731.1 non-coding downstream 699975 48746683 ~ 48746812 (-)
XLOC_016856 NA non-coding downstream 702793 48739542 ~ 48743994 (-)
XLOC_016855 NA non-coding downstream 714259 48731479 ~ 48732528 (-)
XLOC_016854 NA non-coding downstream 732151 48711148 ~ 48714636 (-)
XLOC_016870 NA non-coding upstream 337754 49792207 ~ 49793420 (-)
XLOC_016880 CABZ01067968.1 non-coding upstream 1018973 50473426 ~ 50473542 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G287735 NA non-coding CI01000073 null 882760 ~ 885894 (+)
striped catfish (Pangasianodon hypophthalmus) LOC117599497 LOC108261932,LOC108279477,LOC108261554 non-coding NC_047612.1 CM018558.1 1101824 ~ 1103022 (+)
tiger barb (Puntius tetrazona) G15071 NA non-coding NC_056700.1 CM032069.1 24523424 ~ 24602792 (+)