G287735


Basic Information

Item Value
gene id G287735
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000073
NCBI id null
chromosome length 1307889
location 882760 ~ 885894 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU326201
TTTAGTTTTTATTTATTTTTTCATGTAGTCATATTCTGTGTCATATAATTCAGGCTGAAAGAACCTGTAATAGTACATCAGCAGAAAGAGGAAAGGTTTTTGACACTTTGTGATTGACATTCACAAAAATATATATATATATTTAAATATAGCTACAGGACACAGTGATCAAGAATACGGGTCTCCTATTCGGTGCAAAGTGTGTGTGTGTATGTGTGTGTATGTGTTGTCGGCAGAGGATACTGGTGAGACAGAGACCAGCTATCTCCCTGAGAATAAATCTTTTTTTGTGTGAAACACACAGGAACAGAAACATTTCTTCTACAAAAAAAATAAAATAAAATAAAATAAAATAAACATGGAAATTGCTTTACAGGGAGACTGAATGAGACAAACACAGTTTTGTCTTAACAGGAAGGCATGCATCAAAGGCCTAGAGGTGGGGATTGTCAAAACAACACATTTAAAAATACATTGCACAGACATATTTCCCATAATTCTCATTCTTAAACCAAGGGCAGGCTACACTCCTTGACGTGAGAGGTTTGTAATGTTGGGCACACAAAAAGAAGACAGATTTTCTCTTGTTCATTAAAAACAGATACAAAACCATATCTTTCTCTTTCATACAGAATACAACATCATTCATTCATCTGAATCACTTAAAACCAGTTGTGTAGTATATATTGTAGTACTATAAACAATACCGTGAACCTCGACTCAAAGGAGTAGCTGAGAACTCTGTTGAAACTGTGTTTTTGTTGTACTATGGTGCACTAGTAGGAAAAATAGGATGGAAGGACGCGATCCGGACCACAGAAATGGACAAAAGGAGAGGTGATCAACAATTTACAAAATAATACAACATAAACCACAGCCGTGCTCTGTACCCGAAACCTACAGGACTGAGCTTTGATGGAATCTCCTTTTCTCTTGCTCTTTTCTTTCAGTTTGTGAAAGTATCTGAAGCCCATTAGACATAACATCCACAGATCTGTGTGTCAACAGAACAATGTCAATGTCGGCACACCATCCAGCTTGGCTCTCCTATAAGCGTTCTGTCCGAAGCAGCTCCAGAACAAAATGGGCAAAAGTCAGTCCAAACCCAGTTCATTTCTCTGGTCCGGTACTTCCATGCACAAGCTGGAAGAATTCAAAAGCCGGCTGATGAAAGTCCTGGCTCTTTAACATTCCCATCTCTCTTCCTTACCCGCTCCACCTTTCTCTCTCTCTCTCTTTCGCTATCTTGACTAATTTATTTACATTCCTATTCAAAATAATCTTTTAGAAATGTCCATATAAATGAAATGAACATTTAATTGTTTCTTATTCCAAAGTGGCATTTACAAGGGAAGGGGACATGGGACTGAGGTTTCTCATTGCATTAAAATGACAACAAAAAAATAAGGTGCAGCACCAAACACTGTCAAAATGTGCCTGAGCAAATAAGAGCATGTGTGGATGGAATCACTGCTTCGAAAGTTGTGTTTGCCAATCCTTTACAGTCATGCCCAAGTTTGCAAACTCCTTATATATCAGTATTCTACTGAGTATCTGTTTTGCATTTAATATTGTGTGCTTTTGCAGTTGTTTGCCAAAGTCTAATACCATACTGAATGTGTCAAGTTCTGATGAATATGAGGTATGTGATCATGTAAATAACTGTTAAAGTGAGGATTGTGTGGTTTTCTTTGCTTAACTGTAACAAAAAGGCATTCACAAACGTTTGGTCATGACTGCACGTTTGTAGTGATAATCAGGTTGTTCTATTGCACATTAGAAAAGAGTTTAGCACACTTATGATTTCTGGTTCGTTTAAATAGCTTTAAAGGATATATTCCAGGTTAAATATAAGTTCAACTCAGATGCTAACAGATAAGTTAAGAACTATAAGGGGCAATCGTTTTATAACCATACAGTTGCCCCATATACTTCCACTATAAGTGCATTTCTGTCAATGCATGTTTGTTTTCACAAACTGAGAGATGATTCAAAATTATTTTCTAAAGCTTTTAAATTTTTTTTCTTAATGTATTATTTTCATTAAATTAAATTAAAAATGTATTTTAATTATTATTATTACAAACTTGTATTTAACATGAAATGTTCATTTAAAGTAGCACTGGTAACATTGGTCCCTTCATTTTTAACGAACAATCTGGGCACATTAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGTGGATTGTCAAAGTCTCATAAAGCAGAATGCAAGACCAAAAGTGCATTGTGTACATTCGGTCTCAAATCAAAATAAGTGCCTTTGCTTTGGGATACATTCATGATTCGTTTGAGGGGAGAGGGAGGGGAAAAAAAGCGATATTAGTGCTTAAAGAGTGATTCGTCGGGGAAGGACGTGTGACCGTCACCTAGTACGTAGGATGCACTTCATTAAAAAAGGTGTTGTGCTCTCCTGAATGTTCATGTGGAAGAGAGTTTGATCCTGTAAAATTCTTAAAATCATATTTATAAAACCCATTTAAATAGCTCTTTGTGTGCAGATGCAGAAGGAATAGTAGCATGCTTAGACATCAACAAAGGGCCCTTGCAAGCATACATCTGTACATTAAAGATCATTTAGGAGTGTTTCTGTAAAATAATAAAAATTTTGAGAGCACAACTCCAGGAGTAATCCATATACGTGTATGTTTGTGTGTGTTGTCGAATCTGAAATACTTTGTTGGCCCCTTTACCGTAGCAGCATGTGTTTGCGCATATGAATGTGTATGCAGTGGGTTAAGTGTATTGTGTTTGTATGTATGCTGACAGTGCTGCAATAGACTGAGGATTCTCCCTGGAGGTTTTTAAAATGTTTTCCTGTGAAATGCTGTTTTTACACGTAATGGACTATCTTTAACACAAGCCTATAATTTCCCCTTCACACTCTCTCTCTCATTCTCTCCCTCACTATCTCCCTCACTATCTCCCTCACTCTAACTGTTGGTGGAGTCAGGGAAGTTGATCTCGCTGCCGAACACTTCCCTGTACAGAGGCGGGAAGTTGTAGGCTGTTTCCGGGTGAACCAGGCGGAAGAACTCCAGCTTGTCAATATGGAGGTTACAGATCGACTTCATCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU326201 True 3099 lncRNA 0.37 2 882760 885894

Neighbor

gene id symbol gene type direction distance location
CI01000073_00805997_00811146 NA coding upstream 71595 805997 ~ 811165 (+)
CI01000073_00792429_00801911 CACTIN, CACTIN.L coding upstream 80512 792429 ~ 802248 (+)
CI01000073_00790983_00791279 NA coding upstream 91239 790526 ~ 791521 (+)
CI01000073_00688992_00691075 BLVRA coding upstream 191506 688992 ~ 691254 (+)
CI01000073_00638193_00673213 HECW1B, HECW1 coding upstream 209059 638193 ~ 673701 (+)
CI01000073_00925356_00926204 NA coding downstream 37819 923713 ~ 926721 (+)
CI01000073_01036546_01038321 NA coding downstream 150561 1036455 ~ 1038388 (+)
CI01000073_01099082_01112685 CDC34A, UB2R1, CDC34, UBE2R2, CDC34B coding downstream 212946 1098840 ~ 1113138 (+)
CI01000073_01130335_01140889 KCNJ9 coding downstream 243987 1129881 ~ 1142142 (+)
CI01000073_01161805_01169094 NA coding downstream 275911 1161805 ~ 1170873 (+)
G287740 NA non-coding upstream 40117 837400 ~ 842643 (+)
G287743 NA non-coding upstream 67658 812629 ~ 815102 (+)
G287757 NA non-coding upstream 71003 811554 ~ 811757 (+)
G287649 NA non-coding upstream 106955 774636 ~ 775805 (+)
G287859 NA non-coding downstream 189583 1075477 ~ 1075758 (+)
G287860 NA non-coding downstream 190203 1076097 ~ 1076335 (+)
G287864 NA non-coding downstream 195804 1081698 ~ 1083125 (+)
G287880 NA non-coding downstream 285425 1171319 ~ 1173975 (+)
G287899 NA non-coding downstream 386932 1272826 ~ 1273425 (+)
G287638 NA other upstream 164359 709044 ~ 718401 (+)
G287391 NA other upstream 682988 190944 ~ 199772 (+)
CI01000073_00048073_00049706 NA other upstream 792037 47933 ~ 50512 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016864 NA non-coding NC_007113.7 CM002886.2 49446787 ~ 49454453 (-)