Gene
RNA
| Item | Value |
|---|---|
| gene id | G287743 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000073 |
| NCBI id | null |
| chromosome length | 1307889 |
| location | 812629 ~ 815102 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU326211 | True | 1961 | lncRNA | 0.40 | 2 | 812629 | 815102 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000073_00805997_00811146 | NA | coding | upstream | 1464 | 805997 ~ 811165 (+) |
| CI01000073_00792429_00801911 | CACTIN, CACTIN.L | coding | upstream | 10381 | 792429 ~ 802248 (+) |
| CI01000073_00790983_00791279 | NA | coding | upstream | 21108 | 790526 ~ 791521 (+) |
| CI01000073_00688992_00691075 | BLVRA | coding | upstream | 121375 | 688992 ~ 691254 (+) |
| CI01000073_00638193_00673213 | HECW1B, HECW1 | coding | upstream | 138928 | 638193 ~ 673701 (+) |
| CI01000073_00925356_00926204 | NA | coding | downstream | 108611 | 923713 ~ 926721 (+) |
| CI01000073_01036546_01038321 | NA | coding | downstream | 221353 | 1036455 ~ 1038388 (+) |
| CI01000073_01099082_01112685 | CDC34A, UB2R1, CDC34, UBE2R2, CDC34B | coding | downstream | 283738 | 1098840 ~ 1113138 (+) |
| CI01000073_01130335_01140889 | KCNJ9 | coding | downstream | 314779 | 1129881 ~ 1142142 (+) |
| CI01000073_01161805_01169094 | NA | coding | downstream | 346703 | 1161805 ~ 1170873 (+) |
| G287757 | NA | non-coding | upstream | 872 | 811554 ~ 811757 (+) |
| G287649 | NA | non-coding | upstream | 36824 | 774636 ~ 775805 (+) |
| G287656 | NA | non-coding | upstream | 47398 | 761938 ~ 765231 (+) |
| G287657 | NA | non-coding | upstream | 47867 | 759073 ~ 764762 (+) |
| G287740 | NA | non-coding | downstream | 22298 | 837400 ~ 842643 (+) |
| G287735 | NA | non-coding | downstream | 67658 | 882760 ~ 885894 (+) |
| G287859 | NA | non-coding | downstream | 260375 | 1075477 ~ 1075758 (+) |
| G287860 | NA | non-coding | downstream | 260995 | 1076097 ~ 1076335 (+) |
| G287864 | NA | non-coding | downstream | 266596 | 1081698 ~ 1083125 (+) |
| G287638 | NA | other | upstream | 94228 | 709044 ~ 718401 (+) |
| G287391 | NA | other | upstream | 612857 | 190944 ~ 199772 (+) |
| CI01000073_00048073_00049706 | NA | other | upstream | 721906 | 47933 ~ 50512 (+) |
